中德临床肿瘤学杂志（英文版）2007，Vol.6Issue(1)：32-36,5.
用基因芯片筛选胃黏膜癌变相关基因
Screening of the carcinogenesis associated gene in gastric mucosa by gene chip
Shenhua Xu 1Chuanding Yu 1Hangzhou Mou 1Zhiming Jiang 1Chihong Zhu 1Xianglin Liu1
作者信息
- 1. Zhejiang Cancer Research Institute, Hangzhou 310022, China
- 折叠
摘要
Abstract
Objective: To study the difference of gene expression and screen the carcinogenesis associated gene in gastric mucosa by oligonucleotide microarray. Methods: Using the U133A gene chip to detect the gene expression profile difference between pericancerous mucosa (mucosa inside nearly 2 cm by cancer) and normal section of gastric mucosa. Bioinformatics was used to analyze the detected result on their localization and function in chromosome. Results: (1) A total of 150 genes with a difference of more than 3 times in expression levels by comparing the pericancerous mucosa with normal gastric mucosa, of 130 genes were up-regulated (SLR＞1.5), and 20 were down- regulated (SLR＜-1.5). From the gene expression difference was to do the function classification, among those 22 enzyme and 6 enzyme regular genes were most one (18.7%).The next were 17 nucleic acid binding associated genes (11.3%). The third were 15 signal transduction associated genes(10%), Fourth, were 13 protein binding associated genes (8.7%). Besides the 40 genes were unknown their function, above mentioned 4 groups were 48.7% of the gene total number; (2) The pericancerous mucosa (P) and gastric cancer (T) were simultaneously compared with normal gastric mucosa, which had 71 genes with the same expression difference, of 61 genes were up-regulated (pericancerous SLR＞1.5), and other 10 genes were down-regulated (pericancerous SLR＜ -1.5). From their localization on the chromosome, there was simultaneously 71 genes appearance both in the pericancerous mucosa and in gastric cancer. The most one was 11 abnormal genes on the No. 19 chromosome. The next was No. 1, 2, 16 and 17chromosomes which had 6 genes, respectively. It was not finding an abnormal gene on the No. 5, 14, 22 and Y chromosome.Conclusion: It suggested those genes may be related to the promotion in early gastric carcinogenesis and their progress.Four main groups (enzyme and enzyme regular, nucleic acid binding, signal transduction, protein binding) that associated gene's abnormality be played an importance role in studying the carcinogenesis of gastric cancer. The No. 19 and No. 1, 2,16, 17 chromosomes are important sites of the oncogene transformation.关键词
pericancerous mucosa/gene expression profile/carcinogenesis associated gene/localization in chromosomeKey words
pericancerous mucosa/gene expression profile/carcinogenesis associated gene/localization in chromosome分类
临床医学引用本文复制引用
Shenhua Xu,Chuanding Yu,Hangzhou Mou,Zhiming Jiang,Chihong Zhu,Xianglin Liu..用基因芯片筛选胃黏膜癌变相关基因[J].中德临床肿瘤学杂志（英文版）,2007,6(1):32-36,5.
