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Phylogenetic Relationships in Genus Arachis Based on SSR and AFLP Markers

TANG Rong-hua ZHUANG Wei-jian GAO Guo-qing HE Liang-qiong HAN Zhu-qiang SHAN Shi-hua JIANG Jing LI Yang-rui

中国农业科学(英文版)2008,Vol.7Issue(4):405-414,10.
中国农业科学(英文版)2008,Vol.7Issue(4):405-414,10.

Phylogenetic Relationships in Genus Arachis Based on SSR and AFLP Markers

Phylogenetic Relationships in Genus Arachis Based on SSR and AFLP Markers

TANG Rong-hua 1ZHUANG Wei-jian 2GAO Guo-qing 3HE Liang-qiong 1HAN Zhu-qiang 1SHAN Shi-hua 4JIANG Jing 1LI Yang-rui3

作者信息

  • 1. Cash Crops Research Institute, Guangxi Academy of Agricultural Sciences, Nanning 530007, P.R.China
  • 2. Crop Science School, Fujian Agriculture and Forestry University, Fuzhou 350002, P.R.China
  • 3. Guangxi Crop Genetic Improvement and Biotechnology Laboratory/Guangxi Academy of Agricultural Sciences, Nanning 530007, P.R.China
  • 4. Shangdong Peanut Research Institute, Qingdao 266100, P.R.China
  • 折叠

摘要

Abstract

Fourteen wild species of different sections in the genus Arachis and 24 accessions of the AABB allotetraploid A. hypogaea (cultivated peanut) from several countries which belong to different botanical varieties, were analyzed by SSR and AFLP marker systems. The assay-units per system needed to distinguish among all the tested accessions were at least five for SSR or two for AFLP. The genetic distance detected by the SSR markers ranged from 0.09 to 0.95, and the mean was 0.73; and the genetic distance detected by the AFLP markers ranged from 0.01 to 0.79 with an average of 0.42. All the tested peanut SSR primer pairs were multilocus ones, and the amplified fragments per SSR marker in each peanut genome ranged from 2 to 15 with the mean of 4.77. The peanut cultivars were closely related to each other, and shared a large numbers of SSR and AFLP fragments. In contrast, the species in the genus Arachis shared few fragments. The results indicated that the cultivated peanut (A. hypogaea L.) varieties could be partitioned into two main groups and four subgroups at the molecular level, and that A. duranensis is one of the wild ancestors of A. hypogaea. The lowest genetic variation was detected between A. cardenasii and A. batizocoi, and the highest was detected between A. pintoi and the species in the section Arachis. The relationships among the botanical varieties in the cultivated peanut (A. hypogaea L.) and among wild species accessions in section Arachis and those in other sections in the genus Arachis were discussed.

关键词

Arachis, SSR, AFLP, genetic diversity, phylogenetic relationship

Key words

Arachis, SSR, AFLP, genetic diversity, phylogenetic relationship

分类

农业科技

引用本文复制引用

TANG Rong-hua,ZHUANG Wei-jian,GAO Guo-qing,HE Liang-qiong,HAN Zhu-qiang,SHAN Shi-hua,JIANG Jing,LI Yang-rui..Phylogenetic Relationships in Genus Arachis Based on SSR and AFLP Markers[J].中国农业科学(英文版),2008,7(4):405-414,10.

基金项目

This study was supported by the Natural Science Foundation Guanxi Province,China(0542027),and the National Natural Science Foundation of China(30660094). (0542027)

中国农业科学(英文版)

2095-3119

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