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Establishment of Ecotilling for Discovery of DNA Polymorphisms in Brassica rapa Natural Population

WU Jian SUN Ri-fei ZHANG Yan-guo WANG Xiao-wu

中国农业科学(英文版)2005,Vol.4Issue(9):654-659,6.
中国农业科学(英文版)2005,Vol.4Issue(9):654-659,6.

Establishment of Ecotilling for Discovery of DNA Polymorphisms in Brassica rapa Natural Population

Establishment of Ecotilling for Discovery of DNA Polymorphisms in Brassica rapa Natural Population

WU Jian 1SUN Ri-fei 2ZHANG Yan-guo 1WANG Xiao-wu1

作者信息

  • 1. Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing 100081, P.R. China
  • 2. Graduate School, Chinese Academy of Agricultural Sciences, Beijing 100081, P.R. China
  • 折叠

摘要

Abstract

Ecotilling is a new approach based on enzyme-mediated heteroduplex cleavage to discover DNA polymorphisms in natural population. We used mung bean nuclease(MBN) instead of routinely used CELI to cleave single base pair mismatches in heteroduplex DNA templates. Nested set of primers were designed to amplify targeted region to avoid the influence of the variation in quality and quantity of the genomic DNA. To reduce the costs in fluorescently labeled primers, we added M13 adapter to 5'end of gene specific primers to make IRD dye labeled M13 forward and reverse primers possibly universal for different genes. A Brassica rapa ZIP gene homologue was subjected to the analysis to practise the feasibility of the method in polymorphisms detection. Our experiment showed this method is efficient in discovering DNA polymorphisms in Brassica rapa natural population.

关键词

Ecotilling/MBN/DNA polymorphism

Key words

Ecotilling/MBN/DNA polymorphism

分类

农业科技

引用本文复制引用

WU Jian,SUN Ri-fei,ZHANG Yan-guo,WANG Xiao-wu..Establishment of Ecotilling for Discovery of DNA Polymorphisms in Brassica rapa Natural Population[J].中国农业科学(英文版),2005,4(9):654-659,6.

基金项目

The work was funded by The Opening Lab of Vegetable Genetics and Physiology of Ministry of Agriculture and Sino-Dutch Joint Lab of Horticultural Genomics Technology, P.R.China. ()

中国农业科学(英文版)

2095-3119

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