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用于DNA序列结构分析的特征抽取方法

罗代升 膝奇志 余艳梅

四川大学学报(自然科学版)2005,Vol.42Issue(1):87-92,6.
四川大学学报(自然科学版)2005,Vol.42Issue(1):87-92,6.

用于DNA序列结构分析的特征抽取方法

A Mehtod of Feature Extraction for Structure Analysis of DNA Sequences

罗代升 1膝奇志 1余艳梅1

作者信息

  • 1. 四川大学电子信息学院,成都,610064
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摘要

Abstract

The sequence-specific primer of human DNA sequences in human genome project is a great achievement in life science and genetic engineering. However, it has a long way to reach the goal of interpreting the bioinformation hidden in genomes. This is because that the structure of DNA sequences is difficult to be analyzed and recognized. A method of feature extraction is proposed for structure analysis of DNA sequence data. In the method, high dimensional features are extracted using co-occurrence probabilities from the code arrangements of DNA sequence data.Then the patterns of the structure are classified using correlation method and/or Bayes classifier.Some simulating experiments have been done. The experiments show that the method proposed is suitable for structure analysis of any DNA sequence data.

关键词

DNA序列结构分析/生物信息解译/特征抽取/模式分类/贝叶斯分类器

Key words

structure analysis of DNA sequence data/interpretation of bioinformation/feature extraction/pattern classification/Bayes classifier

分类

生物科学

引用本文复制引用

罗代升,膝奇志,余艳梅..用于DNA序列结构分析的特征抽取方法[J].四川大学学报(自然科学版),2005,42(1):87-92,6.

基金项目

National Science Foundation of China(60372079) (60372079)

四川大学学报(自然科学版)

OA北大核心CSCD

0490-6756

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