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苹果EST数据分析平台的构建及初步应用

岳鹏 钟翡 雷恒久 柳爱玲 刘兰英 李天红

中国农业大学学报2011,Vol.16Issue(4):134-140,7.
中国农业大学学报2011,Vol.16Issue(4):134-140,7.

苹果EST数据分析平台的构建及初步应用

Construction of EST-data analysis platform for Malus domestica and its preliminary application

岳鹏 1钟翡 1雷恒久 1柳爱玲 1刘兰英 2李天红1

作者信息

  • 1. 中国农业大学农学与生物技术学院/北京市果树逆境生理与分子生物学重点开放实验室,北京100193
  • 2. 北京市海淀区植物组织培养技术实验室,北京100091
  • 折叠

摘要

Abstract

In order to use ESTs data for Malus domestica more efficiently and conveniently,an EST-data analysis platform as being named "Malus domestica Micro-Workstation" was constructed and a sequence extending system was built on this basis.Upon test with the platform,the drought stress-related genes from 324 308 ESTs of Malus domestica were examed for prediction.The results showed that 1 979 sequences of the drought stress-related genes were found,in which 109 sequences were identified with potentially full-length coding regions.A total of 959 drought stress-related sequences may be down-regulated,while the other 1 020 sequences may be up-regulated.Then these drought stress-related sequences were classified into various functional types,according to cellular component,molecular function or biological process.The data analysis platform could be used for apple biotechnology research such as local inquiry,sequence annotation,sequence extension and so on.

关键词

苹果/EST/数据分析平台/序列延伸/干旱胁迫

Key words

Malus domestica/EST/data analysis platform/sequence extend/drought stress

分类

农业科技

引用本文复制引用

岳鹏,钟翡,雷恒久,柳爱玲,刘兰英,李天红..苹果EST数据分析平台的构建及初步应用[J].中国农业大学学报,2011,16(4):134-140,7.

基金项目

国家自然科学基金资助项目(30871696) ()

公益性行业(农业)科研专项经费项目(201003021) ()

中国农业大学学报

OA北大核心CSCDCSTPCD

1007-4333

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