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基于Normalized Cut的基因表达数据聚类

王俊生 王年 郭秀丽 唐俊

安徽大学学报(自然科学版)2012,Vol.36Issue(4):68-72,5.
安徽大学学报(自然科学版)2012,Vol.36Issue(4):68-72,5.

基于Normalized Cut的基因表达数据聚类

Clustering of gene expression data based on Normalized Cut

王俊生 1王年 1郭秀丽 2唐俊1

作者信息

  • 1. 安徽大学计算智能与信号处理教育部重点实验室,安徽合肥 230039
  • 2. 山东省信息中心,山东济南 250011
  • 折叠

摘要

Abstract

Cluster analysis with gene expression data can improve tumor diagnosis accuracy and it has a positive significance on biomedical research. This paper proposed a method based on Normalized Cut to solve the clustering problem of gene expression data. Firstly, samples were mapped to the points of high dimensional space and normalized laplacian matrix was constructed by affinity matrix and degree matrix. Then, the indicator vector reflecting category information of original samples was obtained by singular value decomposition of normalized laplacian matrix. Finally, the clustering problem was solved by using the signs of the indicator vector components. The validity of this method was proven by experiments on leukemia data and colon cancer data.

关键词

聚类/指示向量/Normalized Cut/基因表达数据

Key words

clustering/ indicator vector/Normalized Cut/ gene expression data

分类

信息技术与安全科学

引用本文复制引用

王俊生,王年,郭秀丽,唐俊..基于Normalized Cut的基因表达数据聚类[J].安徽大学学报(自然科学版),2012,36(4):68-72,5.

基金项目

国家自然科学基金资助项目(60772121) (60772121)

安徽大学“211工程”学术创新团队基金资助项目(KJTD007A) (KJTD007A)

安徽大学学报(自然科学版)

OA北大核心CSTPCD

1000-2162

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