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PHACTR3基因与中国汉族和美国高加索人群骨密度的关联研究

谭丽君 杨铁林 刘拥军 邓红文

激光生物学报2012,Vol.21Issue(4):365-369,5.
激光生物学报2012,Vol.21Issue(4):365-369,5.DOI:10.3969/j.issn.1007-7146.2012.04.014

PHACTR3基因与中国汉族和美国高加索人群骨密度的关联研究

Genetic Variants in the PHACTR3 Gene are Associated with Bone Mineral Density in both Chinese and Caucasian Populations

谭丽君 1杨铁林 2刘拥军 3邓红文1

作者信息

  • 1. 湖南师范大学生命科学学院分子与统计遗传学研究室,湖南长沙410081
  • 2. 西安交通大学生命科学与技术学院分子遗传所,陕西西安710049
  • 3. Center of Bioinformatics and Genomics,School of Public Health and Tropical Medicine, Tulane University, New Orleans, LA, USA
  • 折叠

摘要

Abstract

Our previous genome-wide association study detected that PHACTR3 gene was associated with hip fracture. To investigate the relationship between SNPs within and near the PHACTR3 gene and BMD (bone mineral density) at both hip and spine, a fine-mapping association analysis was performed. A total of 140 SNPs were tested in a US Caucasian population (2,286 unrelated subjects) and a Chinese population (1 ,627 unrelated Han subjects). Plink software was used to test association of PHACTR3 genes with spine and hip bone mineral density, Our study confirmed that two SNPs (rsl555364 and rs6064822) that were previously reported to be associated with hip fracture were also associated with spine and hip BMD, with P values ranging from 4. 89 x 10"2 to 1. 26 x 10 . Besides the two SNPs, we identified another three SNPs( rs6027138 ,rsl182531 , rsl182532) associated with Chinese and Caucasians spine and hip BMD, with meta-analysis P value ranging from 1. 40 ×10-3 to 4. 00 × 10-4. We also found that rs 6064820 was associated with hip BMD( meta-analysis P = 6. 70 ×10-3 ) . This study further highlighted the importance of PHACTR3 gene influencing bone mineral density variation and provided more information for the understanding of the moiecuiar genetic mechanism of osteoporosis.

关键词

骨质疏松症/骨密度/PHACTR3基因/关联分析

Key words

osteoporosis/ BMD/ PHACTR3/ association analysis

分类

医药卫生

引用本文复制引用

谭丽君,杨铁林,刘拥军,邓红文..PHACTR3基因与中国汉族和美国高加索人群骨密度的关联研究[J].激光生物学报,2012,21(4):365-369,5.

基金项目

国家自然科学基金(30900810) (30900810)

国家自然科学基金委员会(NSFC)-加拿大卫生研究院(CIHR)健康研究合作计划项目(30811120436) (NSFC)

国家自然科学基金委员会和香港研究资助局(RGC)联合资助基金项目(30731160618) (RGC)

NIH(P50AR055081,R01AG026564,R01AR050496,RC2DE020756, R0iAR057049,R03TW008221) (P50AR055081,R01AG026564,R01AR050496,RC2DE020756, R0iAR057049,R03TW008221)

FrankinD.Dickson/Missouri资助项目 ()

激光生物学报

OACSCDCSTPCD

1007-7146

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