核农学报2012，Vol.26Issue(9)：1249-1256,8.
黄瓜全基因组转录因子MADS—box家族基因的序列特征分析
GENOME-WIDE SEQUENCE CHARACTERIZATION ANALYSIS OF MADS-BOX TRANSCRIPTION FACTOR GENE FAMILY IN CUCUMBER (Cucumis sativus L. )
摘要
Abstract
MADS-box is a large gene family which encodes transcription factors and plays important roles in the regulation of plant growth and development. Bioinformatics analysis of MADS-hox gene family in cucumber, including the number of the CsMADS genes, chromosomal localization, the distribution of conserved motifs and phylogenetic relationship were carried out. 41 CsMADS genes in cucumber were identified, 7 of which were in the scaffold while other 34 on 7 chromosomes. All the 41 CsMADSs had a conserved MADS domain. Based on the phylogenetic analysis of MADS-box protein sequences, 41 CsMADSs were categorized into 9 subfamilies, and most of which belonged to the SEP or MEF2-1ike branch. The results provide useful information for further functional analysis of MADS-box gene family in cucumber.关键词
黄瓜/MADS—box/转录因子/生物信息学Key words
cucumber/MADS-box/transcription factor/bioinformation分类
农业科技引用本文复制引用
甘德芳,丁飞,庄丹,梁丹迪..黄瓜全基因组转录因子MADS—box家族基因的序列特征分析[J].核农学报,2012,26(9):1249-1256,8.基金项目
基金项目：安徽省自然基金（1208085MC36）,安徽省教育厅自然科学研究重点项目（KJ2011A110）,安徽农业大学引进和稳定人才科研项目 （）
