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先天性纯红细胞再生障碍性贫血斑马鱼模型相关microRNA的组学研究

张倩 贾海波 方向东 宋斌峰 万扬 张昭军 鲍丙浩 谢尚论 刘汉芝 竺晓凡 袁卫平

发育医学电子杂志Issue(3):139-145,7.
发育医学电子杂志Issue(3):139-145,7.

先天性纯红细胞再生障碍性贫血斑马鱼模型相关microRNA的组学研究

microRNome analysis of the Zebrafish model of diamond-blackfan anemia from Rps19 deficiency

张倩 1贾海波 2方向东 1宋斌峰 2万扬 3张昭军 1鲍丙浩 2谢尚论 2刘汉芝 3竺晓凡 3袁卫平3

作者信息

  • 1. 中国科学院北京基因组研究所 中科院基因组学与信息重点实验室,北京 100101
  • 2. 华中科技大学生命科学与技术学院人类基因组研究中心 分子生物物理教育部重点实验室,武汉 430074
  • 3. 中国医学科学院协和医学院血液病医院 血液学研究所,实验血液学国家重点实验室,天津 300020
  • 折叠

摘要

Abstract

Objective To characterize the genome-wide microRNA profile and to explore the biological functions and probable mechanisms for microRNAs in diamond-blackfan anemia (DBA). Method Zebrafish embryos at the one-cell stage were injected with the Rps19 MO and Rps19+p53 MO. The miRNomes of these zebrafish models and control, generated by miRNA-seq, were compared for determining the microRNA profile characteristics of DBA and regulatory function of p53. Result Rps19 morphants showed an obviously ventrally bent tail and a reduction in the circulating blood cells compared with the control embryos, which were partially rescued in Rps19+p53 MO at 48 hpf. By comparing the miRNomes with control, we found that about 25% of total expressed microRNAs in Rps19 MO had significantly lower expression, which might make an influence on the development process of Zebrafish embryos. The abnormal miRNomes were partially reversed by simultaneous knockdown of p53. We determined 47 microRNAs that were potentially regulated by p53 in DBA pathologic process.Conclusion microRNAs in Zebrafish model of DBA were in an inactive state, which was partially affected by p53.

关键词

纯红细胞再生障碍性贫血/microRNA/Rps19/p53/RNA-seq/斑马鱼

Key words

Diamond-blackfan anemia/microRNA/Rps19/p53/RNA-seq/Zebrafish

引用本文复制引用

张倩,贾海波,方向东,宋斌峰,万扬,张昭军,鲍丙浩,谢尚论,刘汉芝,竺晓凡,袁卫平..先天性纯红细胞再生障碍性贫血斑马鱼模型相关microRNA的组学研究[J].发育医学电子杂志,2014,(3):139-145,7.

基金项目

国家“十二五”科技支撑计划分课题(2013BAI01B09);国家重大科学仪器设备开发专项子课题(2011YQ03013404);国家自然科学基金 (2013BAI01B09)

发育医学电子杂志

2095-5340

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