广西植物Issue(2)：242-247,147,7.DOI:10.3969/j.issn.1000-3142.2014.02.020
云锦杜鹃 NRT 基因序列的生物信息学分析
Bioinformatics analysis of NRT gene sequences in Rhododendron fortunei
摘要
Abstract
We used next generation sequencing technology to investigate the transcriptomes between inoculated roots and uninoculated roots of the Rhododendron fortunei and obtained many differentially expressed genes.In this paper,the nu-cleic acid sequences and amino acid sequences of nitrate transporters from R .fortunei ,were analyzed by bioinformatics tools.Several parameters of these sequences,including sequences composition,physicochemical property,leader peptide, topological structure of transmembrane regions,hydrophobicity or hydrophilicity,secondary structures,functional domains and protein structures,were predicted.Phylogenetic tree was reconstructed for the nitrate transporters protein family. Provide the bioinformatics foundation to understand NRT gene’s function in inoculated seedling roots.关键词
云锦杜鹃/硝酸根转运蛋白/生物信息学/进化树Key words
Rhododendron fortunei/NRT/bioinformatics/phylogenetic tree分类
生物科学引用本文复制引用
..云锦杜鹃 NRT 基因序列的生物信息学分析[J].广西植物,2014,(2):242-247,147,7.基金项目
国家自然科学基金(30972409) （30972409）
