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基于Bioperl实现远程自动获取抗逆基因序列

张晓婧 潘伟民 曹兴芹

生物信息学Issue(3):185-188,4.
生物信息学Issue(3):185-188,4.DOI:10.3969/j.issn.1672-5565.2014.03.06

基于Bioperl实现远程自动获取抗逆基因序列

A BioPerl based remote automatic extraction of NCBI resistance gene sequences

张晓婧 1潘伟民 1曹兴芹1

作者信息

  • 1. 新疆师范大学生命科学学院,新疆 乌鲁木齐830054
  • 折叠

摘要

Abstract

BioPerl has a good performance to acquire and process large amounts of biological data. NCBI provides BioPerl interface to directly access its subordinate Entrez databases( including PubMed) , the E-Utilities. In order to get NCBI gene sequences automatically to build a secondly database for biological stress resistance genes, in this paper, We designed BioPerl based program to extract stress tolerance gene sequence program. This program is smart,lean, and with powerful text processing capability of Perl language,it can achieve different types of remote access to gene sequences for most of the researchers and provide a better way to gain a specific sequence.

关键词

BioPerl/E-Utilities/远程自动获取/抗逆基因

Key words

BioPerl/E-Utilities/Remote automatic download/Resistance gene

分类

生物科学

引用本文复制引用

张晓婧,潘伟民,曹兴芹..基于Bioperl实现远程自动获取抗逆基因序列[J].生物信息学,2014,(3):185-188,4.

基金项目

自治区自然科学基金(2010211022);新疆师范大学研究生科技创新基金(20131203)资助。 ()

生物信息学

1672-5565

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