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一种新的RNA二级结构三维图形表示及其应用

刘立伟 刘铁晖

生物信息学2017,Vol.15Issue(1):55-58,4.
生物信息学2017,Vol.15Issue(1):55-58,4.DOI:10.3969/j.issn.1672-5565.2017.01.201608001

一种新的RNA二级结构三维图形表示及其应用

A new 3-D graphical representation of RNA secondary structure and its application

刘立伟 1刘铁晖1

作者信息

  • 1. 大连交通大学理学院,辽宁 大连 116028
  • 折叠

摘要

Abstract

Recently, we propose a new 3D graphical representation of RNA secondary structures.Based on this graph representation, we will construct the phylogenetic tree of the 9 viruses, and compare and analyze the similarity between the RNA secondary structures.According to the final results, we clearly find that Pair AVII and LRMV are the most similar.In addition, the larger distance values appear in the APMV and ALMV, PDV and AVII, indicating that these RNA secondary structure sequence has obvious difference.The results of this study are very similar to previous published results one.At the same time,the used method is more simple and easy to identify what we see, while the results is very reliable.Therefore, these results demonstrate the effectivity of our methed.

关键词

RNA二级结构/图形表示/系统进化树/相似性

Key words

RNA secondary structure/Graphical representation/Phylogenetic trees/Similarity

分类

生物科学

引用本文复制引用

刘立伟,刘铁晖..一种新的RNA二级结构三维图形表示及其应用[J].生物信息学,2017,15(1):55-58,4.

基金项目

辽宁省教育厅科学研究一般项目(No.L 2015093). (No.L 2015093)

生物信息学

1672-5565

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