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一种改进的小非编码RNA cDNA文库构建方法

杜光石 罗发涛 肖燕 陈红军 吴传芳

四川大学学报(自然科学版)2017,Vol.54Issue(3):653-657,5.
四川大学学报(自然科学版)2017,Vol.54Issue(3):653-657,5.DOI:10.3969/j.issn.0490-6756.2017.03.038

一种改进的小非编码RNA cDNA文库构建方法

An improved method of sncRNA cDNA library construction

杜光石 1罗发涛 1肖燕 1陈红军 1吴传芳1

作者信息

  • 1. 四川大学生命科学学院功能基因组实验室,成都610064
  • 折叠

摘要

Abstract

5S and 5.8S rRNA were removed efficiently by RNA Antisense Purification (RAP).More 5'-monophosphorylated RNAs were acquired after using Tobacco Acid Pyrophosphatase (TAP) and RNA 5'sncRNA Polyphosphatase,which resulted in the increasement of the coverage of the cDNA library.To avoid using the adenylated adapter,a poly(A) structure was added to sncRNA 3'end and then reverse transcription was carried out with oligo(dT)16 VN-adapter primers.This improved sncRNA cDNA library contained 3 × 105 independent clones and the recombination rate was 95 %.The sequencing results showed that the sncRNA cDNA sequences had good integrity by employing this improved and cost-effective method,which laid the foundation for the further study of sncRNA.

关键词

sncRNA/cDNA文库/poly(A)/RNA反义链纯化(RAP)

Key words

sncRNA/cDNA library/poly(A)/RAP

分类

生物科学

引用本文复制引用

杜光石,罗发涛,肖燕,陈红军,吴传芳..一种改进的小非编码RNA cDNA文库构建方法[J].四川大学学报(自然科学版),2017,54(3):653-657,5.

基金项目

国家自然科学基金项目(31371325) (31371325)

四川大学学报(自然科学版)

OA北大核心CSCDCSTPCD

0490-6756

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