六盘水师范学院学报2023，Vol.35Issue(6)：99-105,7.DOI:10.16595/j.1671-055X.2023.06.010
基于罂粟基因组的SSR位点鉴定及其特征分析
Genome-Wide Identification and Characteristic Analysis of Microsatellite Loci in Papaver somniferum
摘要
Abstract
To explore the genetic markers of opium poppy,simple sequence repeats(SSRs)were identified from its genome se-quences using MISA software.A total of 833,005 SSRs were identified,which is classified into 3,288 repeat types.Mononucleotide repeats were the most abundant SSR repeats,accounting for 40.25%of all SSRs.SSR repeat types were AT-rich,and A/T,AAG/CTT and AAAT/ATTT were the major repeat types in the compound-loci SSRs.Of them,A/T was the dominant repeat types of SSRs(more than 38.91%).Further analysis showed that there was a linear relationship between the number of repeat types and the length of chromosomes.These results provide a basis for further developing SSR markers for opium poppy.关键词
罂粟/简单重复序列/重复类型/基因组Key words
Papaver somniferum L/SSR/repeat types/genome分类
医药卫生引用本文复制引用
凌立贞,杜毛毛,张书东..基于罂粟基因组的SSR位点鉴定及其特征分析[J].六盘水师范学院学报,2023,35(6):99-105,7.基金项目
六盘水市科技计划项目"六盘水特色浆果资源开发与利用创新团队"(52020[2019]05-05) （52020[2019]05-05）
六盘水市科技计划项目"六盘水市生物多样性保护和利用科技创新人才团队"(52020[2022]PT-20). （52020[2022]PT-20）
