水产科技情报2024，Vol.51Issue(1)：29-37,9.DOI:10.16446/j.fsti.20221100128
慢性密度胁迫对绿鳍马面鲀肌肉转录组的影响
Effects of chronic density stress on the muscle transcriptome of Thamnaconus septentrialis
摘要
Abstract
In order to understand the molecular response mechanism of Thamnaconus septentrionalis muscle tissue under chronic density stress,and explore the related signaling pathways and differentially expressed genes under density stress,two culturing density groups(i.e.,a middle-density group of 100 individuals/m3 and a high-density group of 500 individuals/m3)were set up in this study.The muscle tissues of T.septentrionalis under the two den-sities were obtained on the 25th and 50th day,respectively,and the Illumina sequencing platform was used to per-form transcriptome sequencing of the muscle tissue samples.A 103.3 Gb of high-quality sequencing data was ob-tained.Compared with the control group,a large number of differentially expressed genes were screened in each ex-perimental group.Through GO(Gene Ontology)functional annotation and KEGG(Kyoto Encyclopedia of Genes and Genomes)functional enrichment analysis,the osteoclast differentiation,MAPK signaling pathway,focal adhe-sion,PI3K-Akt signaling pathway and other signaling pathways were screened,and the key genes such as nfatc1,tgfbr2,map3k14,pparg,fos,flna,flnc,fn1,tln1,and thbs1,were differentially expressed in the muscle tissue of T.septentrionalis.These differentially express genes may play a key role in regulating the cell growth,differentiation and immune ability of T.septentrionalis,which can lay a foundation for studying the regulation of muscle tissue-re-lated gene expression in this fish under density stress.关键词
密度胁迫/基因表达/转录组/绿鳍马面鲀/养殖Key words
density stress/gene expression/transcriptome/Thamnaconus septentrionalis/aquaculture引用本文复制引用
程起群,段晓晨,宋丹..慢性密度胁迫对绿鳍马面鲀肌肉转录组的影响[J].水产科技情报,2024,51(1):29-37,9.基金项目
上海市自然科学基金项目(19ZR1470100). （19ZR1470100）
