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玉米GRAS基因家族的全基因组鉴定及生物信息学分析OA北大核心CSTPCD

Genome-wide Identification and Bioinformatics Analysis of GRAS Gene Family in Maize

中文摘要英文摘要

GRAS基因家族是植物中广泛存在的一类转录因子,在植物生长发育、生物和非生物逆境胁迫、光信号和激素信号应答等多个过程中发挥重要作用.对玉米GRAS基因家族成员的理化性质、染色体定位、系统发育、顺式作用元件等特征进行了分析.结果表明,在玉米全基因组中共鉴定出49个ZmGRAS基因,不均匀地分布于1~10号染色体上,编码蛋白质理化性质差异较大,可能在不同的微环境下发挥作用.系统进化分析将GRAS蛋白分为8个亚家族,可能在调节自身生长发育、逆境应答等过程中具有重要作用.玉米GRAS基因家族的启动子区含有激素应答、光响应、胁迫应答等多种顺式作用元件,推测其可能响应激素、胁迫等多种信号.共线性分析显示,具有共线性关系的基因可能是染色体片段复制的结果,且属于同一亚家族,具有相似的结构和功能.研究结果为进一步研究玉米GRAS基因的功能和逆境胁迫响应机制提供了依据.

GRAS gene family is a kind of transcription factor widely distributed in plants,which plays an important role in plant growth and development,biological and abiotic stress,light signal,hormone signal response and other processes.The physicochemical properties,chromosome localization,phylogeny and cis-acting elements of GRAS gene family in maize were analyzed.The results showed that a total of 49 ZmGRAS genes were identified in the whole genome of maize,which were unevenly distributed on chromosomes 1 to 10,and the physicochemical properties of the encoded proteins were very different,which might play a role in different microenvironments.Phylogenetic analysis classified GRAS proteins into 8 subfamilies,which might play important roles in regulating growth and development and stress response.The promoter regions of GRAS genes in maize contained variety of cis-acting elements such as hormone response,light response and stress response,which might be involved in important response such as hormone and stress.Collinear analysis showed that genes with collinear relationships might be the result of replication of chromosome segments,and belonged to the same subfamily with similar structure and function.The identification and analysis of GRAS gene family in maize provided the basis for further research on the function of GRAS genes and their response mechanisms to stress in maize.

吴占清;陈威;赵展;许海良;李豪远;彭星星;陈东旭;张明月

开封市农林科学研究院,河南开封 475004开封大学信息工程学院,河南省高标准农田智能灌溉工程研究中心,开封市农业物联网工程技术中心,河南开封 475004

农业科学

玉米GRAS基因家族全基因组鉴定生物信息学分析

maizeGRAS gene familycomplete genome identificationbioinformaticsanalysis

《中国农业科技导报》 2024 (003)

15-25 / 11

河南省中央引导地方科技发展资金项目(Z20221343006).

10.13304/j.nykjdb.2023.0551

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