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一种基于real-time PCR技术的TTV检测方法的建立及应用OACSTPCD

Establishment and application of a TTV detection method based on real-time PCR technology

中文摘要英文摘要

目的:本研究旨在开发一种具有更高灵敏度和特异性的TTV检测技术,为揭示TTV在多种疾病过程中的作用提供重要的技术支持.方法:为了更精确、灵敏的检测TTV,本研究分析了目前公布的所有亚型的TTV基因序列,在此基础上建立了一种基于UTR区域的real-time PCR检测方法,并与文献报道应用较为广泛的PCR检测方法进行了对比.结果:本研究建立的方法在1×107~1×101 copies/μL 标准品浓度范围内具有良好的线性关系,相关系数为1.000,斜率为-3.446,检测下限为1×101 copies/μL.重复性试验结果显示,组内变异系数为7.22%,表明本方法重复性、稳定性较强.针对30份临床样本,使用本研究建立的real-time PCR检测方法及目前被多个研究所使用的4套引物进行对比.结果表明,本研究所建立的方法灵敏度显著高于文献中报道的4种方法(P<0.01);Sanger测序结果表明,本方法检测出的30份阳性样本均为TTV,检测特异性为100%.结论:本研究采用基于TaqMan探针的real-time PCR检测方法,检测灵敏性高、覆盖基因型范围广,尤其对于TTV病毒载量较低的情况下能够进行定量检测,对于TTV病毒的致病性及作为免疫标志物的应用提供重要的技术支持.

Objective:To develop a TTV detection technique with higher sensitivity and specificity,providing crucial tech-nical support for uncovering the role of TTV in process of various diseases.Methods:For more accurate and sensitive TTV detec-tion,this study analyzed all published subtypes of TTV genome sequences,on the basis of which a real-time PCR assay targeting the UTR was established and compared with the more widely used PCR assays reported in the references.Results:The method established in this study showed good linear relationship within the range of 1×107 to 1×101 copies/μL standard sample concentra-tions,with a correlation coefficient of 1.000,a slope of-3.446,and a detection limit of 1×101 copies/μL.The repeatability test results demonstrated an intra-assay coefficient of variation of 7.22%,indicating strong repeatability and stability of the method.Compared with four sets of primers widely used in previous studies,our established real-time PCR detection method showed sig-nificantly higher sensitivity(P<0.01)in detecting 30 clinical samples.Sanger sequencing results confirmed that all 30 positive samples detected by our method were TTV-positive,with a detection specificity of 100%.Conclusion:This study adopts a real-time PCR detection method based on the TaqMan probe,which has high sensitivity and wide coverage of genotype range,espe-cially for quantitative detection in cases of low TTV viral load.It provides important technical support for the pathogenicity of the TTV virus and its application as an immune marker.

贾毅博;王高玉;邓宛心;林彩云;杨华;陈运春;尹飞飞

海南医学院公共卫生与全健康国际学院,海南 海口 571199||海南医学院-香港大学热带传染病联合实验室,海南 海口 571199海南医学院-香港大学热带传染病联合实验室,海南 海口 571199海南省妇女儿童医学中心,海南 海口 570206海口市中医医院,海南 海口 570206

临床医学

Torque teno virus基因组扩增测序Real-time PCR检测

Torque teno virusGenome amplification and sequencingReal-time PCR detection

《海南医学院学报》 2024 (007)

489-497 / 9

海南省卫生健康行业科研项目(22A200103);海南省自然科学基金面上项目(819MS148)This study was supported by Health Industry Research Project of Hainan Province(22A200103);Natural Science of Hainan Province(819MS148)

10.13210/j.cnki.jhmu.20231117.001

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