硒化物在文蛤响应镉胁迫过程中作用的转录组学分析OA北大核心CSTPCD
Transcriptomics analysis of the role of selenide in the re-sponse to cadmium stress in Meretrix meretrix
研究两种硒化物在文蛤富集、排出镉过程中的作用,对文蛤进行转录组测序,并进行生物信息学分析,以探讨硒化物对Cd2+代谢相关机制.硒化卡拉胶组和亚硒酸钠组共产出 587 855 条高质量reads.基因本体分析功能注释到 15 380 条unigenes,KEGG通路注释到 18 866 条unigenes.差异基因主要富集到肌球蛋白复合物(myosin complex)、离子通道抑制(ion channel suppression)等基因本体分析功能中.差异基因 KEGG 通路富集显示,在嘌呤代谢(purine metabolism)、ECM 受体相互作用(extracellular matrix receptor interaction)、硒化合物代谢(metabolism of selenium compounds)等通路显著富集.从结果分析Cd2+可以使文蛤体内蛋白转录修饰出现异常;有机硒可以通过调控金属离子通道活性来排出细胞内的 Cd2+;无机硒主要作用于文蛤细胞表面,增强其表面活性抵御Cd2+进入细胞;差异基因KEGG注释结果表明有机硒与无机硒在文蛤重金属代谢中作用机制以及途径不相同.
Meretrix meretrix transcriptome was sequenced,and bioinformatics analysis was performed to explore the mechanism of selenium(Se)on cadmium(Cd2+)metabolism.The clams were first exposed to CdCl2 for 3 d,followed by a depuration of 4 d.In depuration period,clams were divided into control,selenocarrageenan,and so-dium selenite groups.A total of 587,855 high-quality reads were obtained from the selenocarrageenan and sodium selenite groups.Overall,15,380 unigenes were annotated by Gene Ontology(GO),and 18,866 unigenes were an-notated by the Kyoto Encyclopedia of Genes and Genomes(KEGG)pathway.GO enrichment revealed that differ-entially expressed genes were mainly enriched in myosin complex,ion channel suppression,etc.KEGG pathway enrichment revealed ribosome biosynthesis in eukaryotes,purine metabolism,ECM receptor interaction,protein digestion and absorption,phagosome,and metabolism of Se compounds.Thus,Cd2+ can cause abnormal protein transcription modification in M.meretrix.Moreover,organic Se can excrete cadmium in cells by regulating the ac-tivity of metal ion channels.Inorganic Se mainly acts on the surface of clam cells and enhances its surface activity to resist the Cd2+ entering the cell,conducive to the discharge of heavy metals.Simultaneously,the difference in gene KEGG annotation results also proves that organic Se and inorganic Se have different mechanisms and path-ways in the metabolism of heavy metals in clams.
郑年昊;孙铭;姚琳琳;荆圆圆;张天文;胡凡光;王兴强;刘广斌
江苏海洋大学海洋生命与水产学院,江苏 连云港 222005山东省海洋科学研究院,山东 青岛 266104
海洋学
文蛤硒化卡拉胶亚硒酸钠转录组分析差异基因表达
Meretrix meretrixselenium carrageenansodium selenitetranscriptome analysisdifferential gene expression
《海洋科学》 2024 (001)
25-35 / 11
山东省现代农业产业技术体系贝类产业创新团队(SDAIT-14);"海生·河口"渔业科技提升工程Supported by the Earmarked Fund for Modern Agro-industry Technology Research System in Shandong Province,No.SDAIT-14;Fish-ery Science and Technology Promotion Project of Hekou
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