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首页|期刊导航|农业生物技术学报|番茄β-BAM基因家族全基因组鉴定及其盐胁迫和外源植物生长调节剂下的表达分析

番茄β-BAM基因家族全基因组鉴定及其盐胁迫和外源植物生长调节剂下的表达分析OA北大核心CSTPCD

Genome-wide Identification of Tomato(Solanum lycopersicum)β-BAM Gene Family and Its Expression Analysis Under Salt Stress and Exogenous Plant Growth Regulators

中文摘要英文摘要

β-淀粉酶(β-amylase,BAM)广泛参与植物体内各种生物学过程的调控,并响应激素与非生物胁迫等多种外界刺激.本研究通过生物信息分析,在番茄(Solanum lycopersicum)中鉴定出8个SlBAM成员,并进行了理化性质、基因结构、系统进化、共线性等分析;使用qPCR对SlBAM基因在盐胁迫和果实发育下的表达模式进行分析.结果表明,SlBAM均具有典型的Glyco_hydro_14结构域,多数SlBAM呈酸性,且都为亲水蛋白.系统发育分析显示,SlBAM可分为6个类群,相同类群具有相似的基因结构及基序分布.顺式作用元件组成表明,大部分SlBAM的表达可能与植物激素、非生物胁迫和光反应等相关.共线性分析结果显示,番茄与拟南芥BAM基因家族有一定的同源性,与马铃薯(Solanum tuberosum)亲缘关系更近.qRT-PCR分析发现,SlBAM基因主要在叶中表达,在根和茎中表达量较低.在盐胁迫下,SlBAM2、SlBAM4和SlBAM6表达上调(P<0.05),SlBAM1和SlBAM3表达下调(P<0.05).当外源激素2,4-油菜素内酯(2,4-epibrassinolide,EBS)浓度为0.1 mol/L时,绿熟期番茄的所有SlBAM基因都显著上调(P<0.05).在α-萘乙酸(1-naphthaleneacetic acid,NAA)影响下,除SlBAM6外的所有SlBAM基因都表达上调,只有SlBAM6表达下调.本研究为进一步揭示番茄BAM基因家族在响应非生物胁迫及其在果实发育中的功能提供了参考依据.

β-amylase(BAM)is widely involved in the regulation of various biological processes in plants and responds to various external stimuli such as hormone and abiotic stress.In this study,8 SlBAM members in tomato(Solanum lycopersicum)were identified through bioinformatics analysis,and their physical and chemical properties,gene structure,phylogenetic evolution and collinearity were analyzed.The expression pattern of SlBAM gene under salt stress and fruit development was analyzed by qPCR.The results showed that SlBAM possessed typical Glyco_hydro_14 domain,and most of them were acidic and hydrophilic proteins.Phylogenetic analysis showed that SlBAM could be divided into 6 groups,and the same groups had similar gene structure and motif distribution.The composition of cis-acting elements indicated that the expression of most SlBAM may be related to plant hormones,abiotic stress and light response.The results of collinearity analysis showed that tomato had certain homology with Arabidopsis thaliana BAM gene family,and was more closely related to potato(Solanum tuberosum).qRT-PCR analysis showed that SlBAM were mainly expressed in leaves,but almost not expressed in roots and stems.Under salt stress,the expressions of SlBAM2,SlBAM4 and SlBAM6 were up-regulated(P<0.05),while the expressions of SlBAM1 and SlBAM3 were down-regulated(P<0.05).When the concentration of 2,4-epibrassinolide(EBR)solution was 0.1 mol/L,the expression of all genes in green ripening stage was significantly up-regulated(P<0.05).Under the influence of 1-naphthaleneacetic acid(NAA),all the genes except SlBAM6 were up-regulated and only SlBAM6 was down-regulated.These results provide a reference for further elucidations of the functions of the BAM gene family in tomato in response to abiotic stress and fruit development.

李贤国;陈兆龙;王泽鹏;戴麒;余庆辉;李宁

新疆农业科学院园艺作物研究所/新疆特色果蔬基因组研究与遗传改良重点实验室,乌鲁木齐 830091||新疆农业大学园艺学院,乌鲁木齐 830052新疆农业科学院园艺作物研究所/新疆特色果蔬基因组研究与遗传改良重点实验室,乌鲁木齐 830091

园艺学与植物营养学

番茄β-淀粉酶(BAM)生物信息学盐胁迫外源激素

Tomatoβ-amylase(BAM)BioinformaticsSalt stressExogenous hormones

《农业生物技术学报》 2024 (005)

1008-1019 / 12

国家自然科学基金(32260763);新疆农业科学院农业科技创新稳定支持项目(xjnkywdzc-2023001-7)

10.3969/j.issn.1674-7968.2024.05.003

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