沙门氏菌感染巨噬细胞的动态转录物组分析OACSTPCD
Dynamic transcriptomic analysis of macrophages infected with Salmonella typhimurium
目的 本文研究了巨噬细胞RAW 264.7 感染鼠伤寒沙门氏菌SL1344 后在分子水平上发生的时序变化,旨在全面了解感染期间的动态转录物图谱.方法 使用鼠伤寒沙门氏菌SL1344 感染巨噬细胞RAW 264.7,分别在 0h、8h和 16h收集细胞样本进行转录物组测序(RNA-sequencing,RNA-seq).通过对转录物组数据进行上下游分析,包括差异基因表达、聚类和功能注释,再结合分子网络研究,来阐明巨噬细胞信号通路的变化.结果 感染的巨噬细胞呈现出明显的形态和转录水平变化.差异基因分析确定了显著的上调和下调模式.聚类揭示了六个基因簇,涉及多种信号通路,包括免疫反应、膜转运和脂质代谢等.结论 巨噬细胞对沙门氏菌感染表现出动态响应,具有明显的时序基因表达模式.免疫反应、膜转运和脂质代谢通路的协同激活暗示了巨噬细胞对外源感染的多层次细胞适应性,为了解巨噬细胞响应沙门氏菌感染的分子机制提供了重要见解.
Objective To comprehensively understand the dynamic transcriptional landscape during infection through investigating the temporal molecular changes in macrophages RAW 264.7 upon infection with Salmonella typhimurium SL1344.Methods Macrophages RAW 264.7 were infected with Salmonella typhimurium SL1344,and cell samples were collected at 0 h,8 h,and 16 h for RNA-sequencing(RNA-seq).Upstream and downstream analyses of the transcriptome data including differential gene expression,clustering,functional annotation,and mo-lecular network studies were conducted to elucidate the signaling pathways changes in macrophages.Results Infec-ted macrophages exhibited significant morphological and transcriptional changes.Differential gene analysis identified significant upregulation and downregulation patterns.Clustering revealed six gene clusters involving various signaling pathways,such as immune response,membrane transport,and lipid catabolic process.Conclusions Macrophages dynamically respond to Salmonella typhimurium infection,displaying distinct temporal gene expression patterns.The coordinated activation of immune response,membrane transport,and lipid catabolic process pathways implies a multifaceted cellular adaptation to external infections,providing essential insights into the molecular mechanisms of macrophage response to Salmonella typhimurium infection.
宋博渊;吴雪丽;李雪媛;王莉莎;陈阳
中国医学科学院基础医学研究所 北京协和医学院基础学院 生物化学与分子生物学系,北京 100005
生物学
巨噬细胞感染模型免疫反应转录物组时序分析
macrophagesinfection modelimmune responsetranscriptometemporal analysis
《基础医学与临床》 2024 (006)
779-785 / 7
中国医学科学院中央级公益性科研院所基本科研业务费(2021-RC310-007)
评论