杉木GRF和GIF基因家族鉴定、表达与互作分析OA北大核心CSTPCD
Identification,Expression and Interaction Analysis of GRF and GIF Gene Families in Cunninghamia lanceolata
生长调节因子(GRF)和GRF相互作用因子(GIF)在植物的生长发育和逆境胁迫响应中发挥重要作用.为研究GRF和GIF基因在杉木生长发育和逆境胁迫响应中的功能,本研究基于杉木全长转录组数据,利用生物信息学手段共鉴定获得5个ClGRFs基因和2个ClGIFs基因.分析结果显示,ClGRFs氨基酸残基数目范围为386(ClGRF4)~723 aa(ClGRF3),等电点为7.07(ClGRF4)~9.26(ClGRF5);2个ClGIFs蛋白氨基酸数目分别为242和258 aa,等电点均在6左右,蛋白质分子质量分别为25.64和27.96 kDa.保守结构域和基序分析发现ClGRFs蛋白均含QLQ和WRC结构域,ClGIFs蛋白均含SSXT结构域,且高度保守.进一步分析结果显示,ClGRFs分别属于进化枝Ⅲ和进化枝Ⅵ,且均受miR396调控.表达分析结果表明,ClGRFs基因的表达具有一定的组织特异性,而ClGIFs在不同组织呈组成性表达,且ClGRFs和ClGIFs基因均能响应赤霉素(GA3)和水杨酸(SA)的处理.酵母双杂交结果表明5个ClGRFs蛋白和2个ClGIFs蛋白均存在互作关系.本研究结果为进一步研究杉木GRF和GIF基因的功能提供了理论基础.
Growth regulators(GRF)and GRF-interacting factors(GIF)play crucial roles in plant growth,development,and response to stress.In order to study the functions of GRF and GIF genes in the growth,development and stress response of Cunninghamia lanceolata,we identified five ClGRFs genes and two ClGIFs genes based on the full-length transcriptome data of C.lanceolata.Our analysis revealed that the deduced amino acid sequence of ClGRFs ranged from 386 aa(ClGRF4)to 723 aa(ClGRF3),with isoelectric points between 7.07(ClGRF4)and 9.26(ClGRF5).The two ClGIF proteins consisted of 242 and 258 aa,respectively,with isoelectric points around 6.Conserved domain analysis showed that all ClGRFs proteins contained QLQ and WRC domains,and all ClGIFs proteins contained SSXT domains.Phylogenetic analysis placed ClGRFs in branch III and branch VI,respectively.And,all the ClGRF genes were regulated by miR396.Further analysis indicated that the expressions of ClGRF genes showed tissue specificity,while the ClGIF genes were constitutively expressed in all detected tissues.Moreover,both ClGRF and ClGIF genes can respond to GA3 and SA treatment.Yeast two-hybrid experiments indicated the physical interactions between all ClGRFs proteins and the two ClGIFs proteins.These results provide an important basis for further studies on the functions of GRF and GIF genes in C.lanceolata.
邱姗;王文新;江梅;黄华宏;林二培
浙江农林大学林业与生物技术学院/亚热带森林培育国家重点实验室,浙江 杭州 311300
杉木GRF基因GIF基因表达分析互作
Cunninghamia lanceolataGRF geneGIF geneexpression analysisinteraction
《核农学报》 2024 (007)
1224-1233 / 10
浙江省重点研发计划项目(2021C02054),浙江省农业新品种选育重大科技专项(2021C002070-8)
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