基于网络药理学及分子对接探讨芦笋抗肿瘤作用的潜在靶点和分子机制OACSTPCD
Mechanism of Asparagus on Antitumor Effect Based on the Network Phar-macology and Molecular Docking
运用网络药理学和分子对接方法研究芦笋抗肿瘤作用的潜在靶点和分子机制.通过中国知网(CNKI)、PubMed和Web ofScience查阅文献,获得芦笋的成分并运用TCMSP、Pubchem和Swiss Target Prediction获取芦笋成分对应靶点,通过OMIM、GeneCards和DisGeNET获得肿瘤疾病相关靶点,并使用Cytoscape软件进行芦笋-成分-靶点网络图构建,再利用芦笋的靶基因与肿瘤的靶基因交集构建PPI网络.通过DAVID数据库进行GO功能分析与KEGG通路富集分析,最后采用AutoDock软件进行关键成分与核心靶点的分子对接验证.筛选出芦笋活性成分20个,潜在作用靶点172个.GO功能分析表明,芦笋发挥抗肿瘤作用的机制可能是通过调节信号传导、酶活性激活与蛋白结合等发挥抗肿瘤作用;KEGG通路富集分析表明,芦笋通过调节HIF-1信号通路、RAP1信号通路、PI3K-Akt信号通路和VEGF通路等起到抗肿瘤作用;分子对接结果表明,配体和受体的结合能均小于-20.93 kJ/mol,表明配体和受体有良好的结合性.本研究揭示芦笋中的槲皮素、山柰素、雅姆皂苷、赖氨酸、香叶木素、原儿茶酸和木犀草素等可能是发挥抗肿瘤作用的关键成分,涉及的主要靶点有AKT1、SRC、PIK3R1和MAPK1等,并遵循了中药多成分-多靶点-多途径的抗肿瘤作用特点,同时也阐明了芦笋发挥抗肿瘤作用的潜在靶点和分子机制.
Network pharmacology and molecular docking were used to investigate the potential targets and molecular mechanisms of as-paragus for its anti-tumor effect.The components of asparagus were obtained through literature review by China Knowledge Network(CNKI),PubMed,and Web of Science,and the corresponding targets of asparagus components were obtained by TCMSP,Pubchem,and Swiss Target Prediction,and targets related to tumor diseases were obtained by OMIM,GeneCards,and DisGeNET.By Cytoscape software constructed asparagus-composition-target network diagram,using the target genes of asparagus and antitumor constructing PPI network intersection set of target genes.DAVID database was used for GO analysis and KEGG pathway enrichment analysis.Finally,AutoDock sof-tware was used for molecular docking verification between key components and core targets.20 active components and 172 potential targets of asparagus were screened out.GO function analysis shows that the mechanism of asparagus's anti-tumor effect may be through regulating signal transduction,activating enzyme activity and binding with protein.KEGG analysis showed that asparagus played an anti-tumor role by regulating HIF-1 signaling pathway,RAP1 signaling pathway,PI3K-Akt signaling pathway and VEGF signaling pathway.Molecular docking results showed that the binding energy of ligand and receptor is less than-20.93 kJ/mol,indicating that ligand and receptor have good binding.It is concluded that Quercetin,kaempin,amsaponin,lysine,geronin,protocatechuic acid and luteolin in asparagus may be the key components to play the anti-tumor role.The main targets involved them are AKT1,SRC,PIK3R1,MAPK1,etc.,which follows the char-acteristics of multi-component-multi-target-multi-pathway anti-tumor effect of Traditional Chinese Medicine.The potential targets and molecular mechanisms of asparagus for its anti-tumor effects were elucidated.
王迪;侯兵乔;牛俊博;于剑平;汲晨锋
哈尔滨商业大学药学院药物工程技术研究中心,黑龙江 哈尔滨 150076哈尔滨商业大学药学院药物工程技术研究中心,黑龙江 哈尔滨 150076||哈尔滨商业大学国家教育部抗肿瘤天然药物工程研究中心,黑龙江 哈尔滨 150076
中医学
芦笋抗肿瘤网络药理学分子对接分子机制
asparagusantitumornetwork pharmacologymolecular dockingmolecular mechanism
《特产研究》 2024 (003)
102-112 / 11
黑龙江省重点研发计划指导类项目(GZ20210088);黑龙江省中医药管理局科技计划项目(ZHY2020-175)
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