激光生物学报2024，Vol.33Issue(3)：217-226,10.DOI:10.3969/j.issn.1007-7146.2024.03.004
国产遗传分析仪测序模块优化设计研究
Optimization Design of Sequencing Module for Domestic Genetic Analyzer
摘要
Abstract
A domestic 24 channels genetic analyzer combined with a domestic 36 cm capillary arrays were used to solve the problems of fluorescence signal correction,running voltage,and migration correction during sequencing on the genetic analyzer based on non-gel sieving capillary electrophoresis technology.Spectral calibration model and appropriate baseline noise values were obtained under the condition that the original spectral fluorescence signal of the analyzer was used as a regulation basis.A standard curve was plotted by combining an running voltage and a base spacing value,while a clear range length was also calcu-lated by a sequencing analysis software,so as to determine the optimal running voltage and base spacing.In addition,a migra-tion offset value was further calculated and a linear model was eventually established between the base size and the migration time,which achieved an accurate identification of bases.It was reported that with the appropriate spectral calibration model and baseline noise threshold limitation,the strongest ability to detect the longest clear range length,that is 561 bp,was found in the analyzer when the running voltage was set to 10 kV and the base spacing was 13.05 frames.By compensating for migration cor-rections,a linear model was established between the base size and the migration time.Among them,R2 values of bases G,A,T,and C increased from 0.992 7,0.992 7,0.994 5,and 0.987 9 to 0.999 6,0.999 8,0.999 6,and 0.999 7,respectively.After correction,all fluorescent bases were accurately labeled without any omissions or errors,clear range length extended to 621 bp.This study could better guide the optimization and design of a sequencing module of the domestic genetic analyzer,making the DNA base recognition function of the analyzer more efficient and accurate.关键词
国产遗传分析仪/无胶筛分毛细管电泳/碱基测序/运行电压/迁移校正Key words
domestic genetic analyzer/non-gel capillary electrophoresis/base sequencing/run voltage/migration correction分类
医药卫生引用本文复制引用
管桦,张建,阮德林,张欣欣,张涛,杨丽萍,张宁杰,闫梁,贾二惠..国产遗传分析仪测序模块优化设计研究[J].激光生物学报,2024,33(3):217-226,10.基金项目
国家自然科学基金项目(61872007) （61872007）
国家重点研发计划项目(2021YFC3300104) （2021YFC3300104）
中央级公益性科研院所基本科研业务费专项资金项目(B23608). （B23608）
