南方农业学报2024，Vol.55Issue(6)：1863-1872,10.DOI:10.3969/j.issn.2095-1191.2024.06.030
柯乐猪XDH基因多态性鉴定及其对繁殖性状的影响
Identification of XDH gene polymorphism and its effects on reproductive traits in Kele pigs
摘要
Abstract
[Objective]To clarify the association between xanthine dehydrogenase gene(XDH)single-nucleotide poly-morphism(SNP)and reproductive traits of Kele pigs,and provide theoretical basis for accelerating the breeding process of Kele pigs.[Method]Eighty-seven healthy multiparous Kele sows were selected as the study subjects.The SNP loci of XDH gene were screened by Sanger sequencing method.The association between SNP loci and reproductive shape in-dexes(number of live piglets,litter weight at birth,average birth weight,number of weaned piglets,weaning litter weight and average weaning weight)of Kele sows was analyzed by general linear model(GLM)in SPSS 22.0.Bioinfor-matics analysis was carried out by RNAfold web server,ExPASy-ProtParam,NovoPro and SWISS-MODEL online soft-wares.[Result]Twelve SNPs loci were screened in the XDH gene of Kele pigs,which were g.108047658C＞G and g.108047680C＞Aloci in intron 33,g.108048009C＞T,g.108048044T＞C,g.108048046T＞C,g.108048047C＞T,g.108048054C＞T g.108048153A＞T,g.108048208A＞G,g.108048212T＞C and g.108048242C＞T loci in intron 34,and g.108047915G＞A site in exon 34.There are 3 genotypes in all 12 SNPs loci,which were moderately polymorphic loci(0.25＜PIC＜0.50).The genotype distributions of the loci g.108048047C＞T,g.108048208A＞G,g.108048242C＞T,g.108048044T＞C,g.108048046T＞C and g.108048212T＞C were consistent with Hardy-Weinberg equilibrium(PHWE＞0.05),the genotype dis-tributions of the remaining 6 SNPs loci deviated significantly from Hardy-Weinberg equilibrium(PHWE＜0.05).There was no strong linkage disequilibrium among the other SNPs loci except for the strong linkage disequilibrium between loci g.108047658C＞G and g.108047680C＞A,between loci g.108048044T＞C and g.108048046T＞C,between loci g.108048046T＞C and g.108048047C＞T.g.108047658C＞G and g.108047915G＞A loci had significant effects on the number of live piglets produced by Kele pigs(P＜0.05,the same below),the number of live offspring of individuals with genotype CG at locus g.108047658C＞G was significantly higher than that of individuals with genotype GG,and the number of live offspring of individuals with genotype AG at locus g.108047915G＞A was significantly higher than that of individuals with genotype AA.Mutation at locus g.108047915G＞A changed the mRNA secondary structure of XDH gene,and the minimum free energy increased from-1508.90 kcal/mol to-1507.80 kcal/mol.Mutation of allele G of XDH gene also changed the molecular formula,relative molecular weight,theoretical isoelectric point(pI),instability coefficient and protein higher structure of XDH gene.[Conclusion]g.108047658C＞G locus in intron 33 and g.108047915G＞A locus in exon 34 of XDH gene in Kele pigs has significant effects on the number of live piglets,which can be used as potential molecular auxiliary markers for improving reproductive traits of Kele pigs.关键词
柯乐猪/XDH基因/SNP位点/繁殖性状/产活仔数Key words
Kele pig/XDH gene/SNPloci/reproductive trait/number of piglets born alive分类
农业科技引用本文复制引用
向进,熊力,李维,谢婷婷,杨齐心,杨红文,王春源,吴燕,张依裕..柯乐猪XDH基因多态性鉴定及其对繁殖性状的影响[J].南方农业学报,2024,55(6):1863-1872,10.基金项目
National Key Research and Development Program of China(2022YFD1100308) （2022YFD1100308）
Guizhou Pig Industry Technology System Construction Project(GZSZCYJSTX-03) （GZSZCYJSTX-03）
Guizhou Science and Technology Plan Project(QKHPTRC[2021]5630) 国家重点研发计划项目(2022YFD1100308) （QKHPTRC[2021]5630）
贵州省生猪产业技术体系建设专项(GZSZCYJSTX-03) （GZSZCYJSTX-03）
贵州省科技计划项目(黔科合平台人才[2021]5630号) （黔科合平台人才[2021]5630号）
