乳腺癌超声征象与关键基因表达状态的相关性研究OACSTPCD
Study on the correlation between ultrasound signs and expression of key genes in breast cancer
目的:探讨乳腺癌超声成像特征与关键基因表达状态的相关性.方法:在美国国家医学图书网PubMed数据库检索乳腺癌关键基因相关文献,汇总乳腺癌相关基因.利用基因与蛋白相互作用检索搜查工具(STRING)和Cytoscape软件对相关基因构建蛋白质相互作用(PPI)网络筛选出关键基因,利用基于基因表达水平值的交互式分析平台(GEPIA)和Kaplan-Meier Plotter数据库对潜在关键基因进行表达验证和患者的预后分析.回顾性分析2022年9月至2023年9月于山西医科大学第一医院就诊的36例经手术病理证实为乳腺癌患者,采用转录组测序技术检测乳腺癌关键基因的表达,收集乳腺癌患者的超声声像图特征,分析其与关键基因的相关性.结果:从筛选的57个基因中共鉴定出排名前10的潜在的关键基因,分别为透明质酸介导的运动受体(HMMR)、苯并咪唑出芽抑制解除同源物(BUB1)有丝分裂检查点丝氨酸与苏氨酸激酶B(BUB1B)、纺锤体微管的装配因子(ASPM)、周期蛋白依赖性激酶1(CDK1)、丝氨酸/苏氨酸蛋白激酶(BUB1)、驱动蛋白家族成员2C(KIF2C)、TPX2微管成核因子(TPX2)、母体胚胎亮氨酸拉链激酶(MELK)、着丝粒蛋白F(CENPF)和拓扑异构酶2A(TOP2A).10个潜在的关键基因在乳腺癌样本中高表达且预后不良.最大径>2 cm乳腺癌患者关键基因TPX2水平高于病灶最大径≤2 cm的乳腺癌患者,有微小钙化乳腺癌患者关键基因MELK水平高于无微小钙化乳腺癌患者,差异均有统计学意义(Z=-2.483、-2.888,P<0.05).剪切波弹性成像参数弹性最大值(Emax)与关键基因BUB1、KIF2C、TPX2、CENPF、TOP2A的表达水平呈正相关(r=0.411、0.399、0.447、0.446、0.337,P<0.05).结论:乳腺癌超声特征可用于预测关键基因的表达状态,可为乳腺癌的早期诊断、治疗方案选择及预后评估等提供更多的依据.
Objective:To investigate the correlation between characteristics of ultrasound image and expression levels of key genes in breast cancer.Methods:By searching the Medicine Pubmed database of the National Library,all the literatures related to relative genes of breast cancer were gathered.Search Tool for Retrieval of Interacting Genes/Proteins and Cytoscape software were used to construct protein-protein interaction(PPI)network for relative genes,and screen out key genes.The expression verification and prognostic analysis of candidate key genes were performed by Gene Expression Profiling Interactive Analysis and Kaplan Meier Plotter database bases on the values of gene expression levels.Retrospective analysis of 36 patients with breast cancer,who were confirmed by surgery and pathology in the First Hospital of Shanxi Medical University from September 2022 to September 2023,was performed.The expression of key genes of breast cancer was detected by the transcriptome sequence technique.The ultrasonographic features of patients with breast cancer were collected,and the correlation between it and key genes were further analyzed.Results:A total of 10 candidate key genes were identified,which included hyaluronic acid mediated motor receptors(HMMR),BUB1 mitotic checkpoint serine/threonine kinase(BUB1B),assembly factors of spindle microtubules(ASPM),cyclin dependent kinase(CDK1),serine/threonine protein kinase(BUB1),members of the driving protein family 2C(KIF2C),microtubule nucleation factor TPX2(TPX2),maternal embryonic leucine zipper kinase(MELK),centromere protein F(CENPF)and topoisomerase 2A(TOP2A).The above 10 candidate key genes were highly expressed in breast cancer samples and they had bad prognosis.The level of key gene TPX2 in patients whose maximum diameter of breast cancer>2cm was higher than that in patients whose the maximum diameter of breast cancer≤2cm,and the level of key gene MELK of patients with micro-calcification of breast cancer was significantly higher than that of patients without micro-calcification of breast cancer,and the differences of them were statistically significant(Z=-2.483,-2.888,P<0.05),respectively.The maximum elastic value(Emax)of shear wave elastography parameters was positively correlated with the expression levels of BUB1,KIF2C,TPX2,CENPF and TOP2A of key genes(r=0.411,0.399,0.447,0.446,0.337,P<0.05),respectively.Conclusion:Ultrasound characteristics of breast cancer can be used to predict the expression level of key genes,which can provide more bases for the choices of early diagnosis,treatment plan and prognostic assessment of breast cancer.
王超;柯强;陈耀东;陈武
山西医科大学医学影像学院 太原 030000山西医科大学第一医院超声科 太原 030000
临床医学
乳腺癌关键基因生物信息学超声检查
Breast cancerKey geneBioinformaticsUltrasound examination
《中国医学装备》 2024 (008)
1-6 / 6
山西省自然科学基金面上项目(20210302123259) General Program of Shanxi Provincial Natural Science Foundation(20210302123259)
评论