基于生物信息学探讨类泛素化修饰在银屑病中的作用机制并药物敏感性分析OA
Using bioinformatics to reveal the pathogenic mechanisms of small ubiquitin-like modifica-tion in psoriasis and to predict drug sensitivity
目的 使用生物信息学方法探讨泛素样修饰蛋白(SUMO)在银屑病中的表达与调控机制,分析其对银屑病代谢相关的影响.方法 通过R语言(3.3.6)绘制SUMO在银屑病和对照组中的差异表达及接收者操作特征曲线(ROC),利用GeneMANIA网站构建SUMO的相互作用网络,采用网络基因富集分析软件(GSVA)展示SUMO在银屑病数据集中的富集通路,采用XGBOOST和随机森林筛选优势基因并在数据集中进行差异表达的验证,使用pRRophetic[R4.2.0]在银屑病数据集寻找可能靶向SUMO的药物.结果 SUMO1、SUMO3、SUMO1P3、SUMO2P3在银屑病皮损中高表达,SUMO在银屑病中与多个代谢通路相互作用,其中SUMO1可证实为与代谢通路相关性最为密切的基因.结论 SUMO mRNA在银屑病皮损中高表达,SUMO1可能通过调控银屑病代谢过程参与银屑病发生发展.
Objective Using bioinformatics to assess the expression levels and regulatory mechanisms of small ubiquitin-related modifier(SUMO)in psoriasis,and to analyze its effect on metabolism.Methods R language(3.3.6 version)was used to determine the difference in ex-pression levels of SUMO between psoriatic patients and controls,and the receiver operating char-acteristic(ROC)curve of SUMO.The interaction network of SUMO was built using the website of GeneMANIA.The network gene enrichment analysis software GSVA was used to determine the en-richment pathway of SUMO in the psoriasis dataset.XGBOOST and random forest were used to screen dominant genes and verify their differential expression.pRRophetic was used to identify po-tential drugs targeting SUMO in the psoriasis dataset.Results SUMO1,SUMO3,SUMO1P3,SUMO2P3 were highly expressed in psoriasis-involved skin.SUMO interacted with multiple meta-bolic pathways in psoriasis.SUMO1 could be the gene most closely related to metabolic pathways.Conclusions SUMO mRNA is highly expressed in psoriasis-involved skin,and SUMO1 may be involved in the onset and development of psoriasis by regulating the metabolic process.
袁立燕;余晓玲;何雪瑜
南方医科大学皮肤病医院,广东 广州 510091南方医科大学皮肤病医院,广东 广州 510091南方医科大学皮肤病医院,广东 广州 510091
银屑病类泛素化修饰SUMO代谢
psoriasissmall ubiquitin-like modificationSUMOmetabolism
《皮肤性病诊疗学杂志》 2024 (12)
842-849,8
国家自然科学基金(82103724),广东省科技计划项目(2022A1515111018),广东省中医药课题(20231109),广州市科技计划项目(202201011412)
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