农业生物技术学报2025，Vol.33Issue(6)：1336-1345,10.DOI:10.3969/j.issn.1674-7968.2025.06.014
威宁鸡PPP3CA基因SNP鉴定及其与生长性状的关联分析
Identification of PPP3CA Gene SNP and Its Association Analysis with Growth Traits in Weining Chickens(Gallus gallus)
摘要
Abstract
The Weining chicken(Gallus gallus)is one of the valuable local poultry genetic resources in Guizhou province.It is of great significance for the genetic improvement and molecular marker-assisted breeding of Weining chickens to study their growth traits and uncover their genetic effects using candidate genes.In this study,a total of 113 Weining chickens(58 males and 55 females)aged 300 days were selected as the study subjects.PCR amplification and direct sequencing were used to identify the SNP locus of PPP3CA gene.Excel was used to calculate genotype frequency,allele frequency,effective allele number and polymorphism information content of each site,and to analyze whether each mutation site was in Hardy-Weinberg equilibrium state.The secondary structure analysis of mRNAs was performed using RNA fold online software.SPSS 27.0 was used to analyze the association between genotypes of different polymorphic loci and body size indexes.The results showed that 3 SNP sites were found on exon 6 of PPP3CA gene in Weining chickens,namely g.151368C＞T,g.151389T＞C and g.151402T＞G,among which missense mutation occurred at g.151368C＞T site,resulting in the conversion of arginine at position 206 on mRNA to tryptophan.g.151402T＞G site missense mutation resulting in the conversion of isoleucine at position 216 to tryptophan.Linkage disequilibrium analysis showed that there was a strong linkage disequilibrium effect between g.151389T＞C and g.151368C＞T,g.151402T＞G.The x2 test showed that g.151368C＞T and g.151389T＞C matched Hardy-Weinberg equilibrium,while g.151402T＞G deviated from Hardy-Weinberg equilibrium.At the g.151402T＞G site,association analysis showed that TT and GG individuals had significantly higher body weight,body slope length,and chest width than TG individuals(P＜0.05),TT individuals had significantly higher chest depth than GG and TG individuals(P＜0.05),GG individuals had significantly higher chest depth than TG individuals(P＜0.05),and TT and GG individuals had extremely significantly longer keel and shank length than TG individuals(P＜0.01).Individuals of the TT and GG types had considerably larger tibia girth than those of the TG type(P＜0.05).Haplotype and diplotype analysis of 3 SNPs showed that there were 4 haplotypes and 8 diplotypes.Among them,diplotype H2H3(TCTCTT)and H1H1(TTCCGG)could be used as molecular marker sites to improve keel length,shank length and shank girth.This study provides a scientific basis for molecular marker-assisted selection for growth traits of Weining chickens.关键词
威宁鸡(Gallus gallus)/蛋白磷酸酶3催化亚基α(PPP3CA)基因/单核苷酸多态性(SNP)/生长性状/关联分析Key words
Weining chicken/Protein phosphatase 3 catalytic subunit α(PPP3CA)gene/Single nucleotide polymorphism(SNP)/Growth trait/Association analysis分类
农业科技引用本文复制引用
赵中龙,叶红英,冉光友,张勇,张习本,王智伟,艾照碧,杨润黔,李未博,陈泽林..威宁鸡PPP3CA基因SNP鉴定及其与生长性状的关联分析[J].农业生物技术学报,2025,33(6):1336-1345,10.基金项目
2024年贵州省生态家禽产业技术体系建设任务书项目(GZSTJQCYJSTX-07) （GZSTJQCYJSTX-07）
毕节市2023年度粤黔东西部协作资金项目 （）
毕节市农业科技计划项目(毕科合[2023]13号) （毕科合[2023]13号）
毕节地方优质鸡产业技术创新人才团队建设项目(毕委人领办通[2023]14号) （毕委人领办通[2023]14号）
