中国水稻科学2026，Vol.40Issue(3)：312-326,15.DOI:10.16819/j.1001-7216.2026.250207
水稻苗期耐冷性Meta-QTL分析及候选基因预测
Meta-QTL Analysis and Prediction of Candidate Genes for Cold Tolerance at Seedling Stage in Rice
摘要
Abstract
[Objective]Low-temperature stress poses a significant threat to rice production,and the development of cold-tolerant varieties through the identification of cold resistance-related genes represents a critical strategy to address this challenge.Meta-QTL analysis offers a powerful approach to integrate quantitative trait loci governing complex agronomic traits,such as cold tolerance,across diverse genetic backgrounds.By improving the precision and reliability of candidate gene localization,this method provides a robust foundation for the cloning and breeding application of cold tolerance genes in rice.[Methods]We conducted a comprehensive meta-analysis of 353 quantitative trait loci(QTLs)associated with cold tolerance at the seedling stage,derived from 38 independent studies.These QTLs were integrated using BioMercator 4.2,followed by Gene Ontology(GO)and Kyoto Encyclopedia of Genes and Genomes(KEGG)enrichment analyses to identify candidate genes within the Meta-QTL regions.[Results]A total of 82 Meta-QTLs were identified,of which 67(81.71%)had confidence intervals of less than 1 Mb.These regions encompassed 9282 annotated genes,including 25 previously reported genes associated with cold tolerance at the seedling stage.GO analysis revealed 99,230,and 119 genes associated with abiotic stress response,environmental stress response,and transcription factors,respectively.KEGG enrichment analysis further identified 27,69,and 9 significantly enriched genes related to abiotic stress response,stress response,and transcription factors,respectively.[Conclusion]Through the integration and analysis of 353 QTLs related to cold tolerance at the seedling stage,82 Meta-QTLs were identified.GO analysis pinpointed 448 candidate genes,while KEGG analysis further refined this list to 105 differentially enriched candidate genes.These findings provide valuable insights for molecular marker-assisted breeding and gene cloning for cold tolerance at the rice seedling stage.关键词
水稻/耐冷性/数量性状位点/Meta 分析/候选基因Key words
rice/cold tolerance/QTL/Meta analysis/candidate gene引用本文复制引用
王洋洋,杨传铭,张喜娟,杨贤莉,王立志,崔士泽,许鑫凯,李红宇,姜树坤..水稻苗期耐冷性Meta-QTL分析及候选基因预测[J].中国水稻科学,2026,40(3):312-326,15.基金项目
国家重点研发计划项目资助(2024YFD2301303) （2024YFD2301303）
黑龙江省农业科技创新跨越工程重大需求科技创新攻关项目(CX23ZD01) （CX23ZD01）
黑龙江省自然基金杰出青年基金资助项目(JQ2023C009) （JQ2023C009）
省属科研院所科研业务费专项(CZKYF2025-1-A004). （CZKYF2025-1-A004）
