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Systematics of the avian family Alaudidae using multilocus and genomic data

Per Alström Urban Olsson Paul F.Donald Martin Stervander Zeinolabedin Mohammadi Erik D.Enbody Martin Irestedt Derek Engelbrecht Pierre-André Crochet Alban Guillaumet Loïs Rancilhac B.Irene Tieleman

鸟类学研究（英文版）2023，Vol.14Issue(2)：137-152,16.

Systematics of the avian family Alaudidae using multilocus and genomic data

Per Alström ¹Urban Olsson ²Paul F.Donald ³Martin Stervander ⁴Zeinolabedin Mohammadi ⁵Erik D.Enbody ⁶Martin Irestedt ⁷Derek Engelbrecht ⁸Pierre-André Crochet ⁹Alban Guillaumet ¹⁰Loïs Rancilhac ¹¹B.Irene Tieleman¹²

作者信息

1. Animal Ecology,Department of Ecology and Genetics,Evolutionary Biology Centre,Uppsala University,Norbyvägen 18D,SE-752 36,Uppsala,Sweden||Key Laboratory of Zoological Systematics and Evolution,Institute of Zoology,Chinese Academy of Sciences,Beijing,100101,China
2. Department of Biological and Environmental Sciences,University of Gothenburg,P.O.Box 463,SE-405 30,Gothenburg,Sweden||Gothenburg Global Biodiversity Centre,P.O.Box 461,SE-405 30,Gothenburg,Sweden
3. BirdLife International,The David Attenborough Building,Pembroke St,Cambridge,CB2 3QZ,UK||Department of Zoology,University of Cambridge,Downing Street,Cambridge,CB2 3EJ,UK
4. Bird Group,Natural History Museum,Akeman Street,Tring,Hertfordshire,HP23 6AP,United Kingdom
5. Department of Biology,Faculty of Sciences,Golestan University,Gorgan,Golestan,Iran
6. Department of Medical Biochemistry and Microbiology,Uppsala University,751 23,Uppsala,Sweden||Department of Biomolecular Engineering,University of California,Santa Cruz,95060,Santa Cruz,CA,USA
7. Department of Bioinformatics and Genetics,Swedish Museum of Natural History,P.O.Box 50007,SE-104 05,Stockholm,Sweden
8. Department of Biodiversity,University of Limpopo,Private Bag X1106,Sovenga,0727,South Africa
9. CEFE,CNRS,Univ Montpellier,EPHE IRD,Montpellier,France
10. Department of Biological&Environmental Sciences,Troy University,Troy,AL,36082,USA
11. Animal Ecology,Department of Ecology and Genetics,Evolutionary Biology Centre,Uppsala University,Norbyvägen 18D,SE-752 36,Uppsala,Sweden
12. Groningen Institute for Evolutionary Life Sciences,University of Groningen,Nijenborgh 7,9747 AG,Groningen,the Netherlands
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摘要

关键词

Phylogeny/Phylogenomics/Multispecies coalescent/Lark/Paraphyly/Taxonomy/Subfamily description

Key words

Phylogeny/Phylogenomics/Multispecies coalescent/Lark/Paraphyly/Taxonomy/Subfamily description

引用本文复制引用

Per Alström,Urban Olsson,Paul F.Donald,Martin Stervander,Zeinolabedin Mohammadi,Erik D.Enbody,Martin Irestedt,Derek Engelbrecht,Pierre-André Crochet,Alban Guillaumet,Loïs Rancilhac,B.Irene Tieleman..Systematics of the avian family Alaudidae using multilocus and genomic data[J].鸟类学研究（英文版）,2023,14(2):137-152,16.

基金项目

We are indebted to Mark Adams and Hein van Grouw and the Natural History Museum,Tring,UK,for access to specimens and multiple toepad samples for DNA （）

to Sharon Birks and the University of Washington Burke Museum,David Willard and the Field Museum,Chicago,Sylke Frahnert and the Museum Für Naturkunde,Berlin,Nigel Collar and Claire Spottiswoode for DNA samples （）

to Nick Horrocks for managing samples from Kenya （）

Robert Dowsett and David Donsker for comments on nomenclature （）

to the National Swedish Research Council(grants No.2015-04402,2019-04486),the Carl Trygger Foundation(CTS 20:6),the Jornvall Foundation,and Julian Francis for financial support （grants No.2015-04402,2019-04486）

and to the National Genomics Infrastructure in Stockholm funded by Science for Life Laboratory,the Knut and Alice Wallenberg Foundation （）

the Swedish Research Council,and the Swedish National Infrastructure for Computing(SNIC)/Uppsala Multidisciplinary Center for Advanced Computational Science for assistance with massively parallel sequencing and access to the UPPMAX computational infrastructure,and SciLifeLab for next-generation DNA sequencing （SNIC）

and to the Research/Scientific Computing teams at The James Hutton Institute and NIAB for providing computational resources and technical support for the"UK's Crop Di-versity Bioinformatics HPC"(BBSRC grant BB/S019669/1).We are grateful to Mansur al Fahad(3),Klas Alstr?m(7),Hadi Ansari(20),Nik Borrow(15),Tomas Carlberg(12,17),G?ran Ekstr?m(14),David Erterius(24),the late Joe Grosel(25,27),Zongzhuang Liu(8),Vincent Legrand(2),Jonathan Martínez(1),Magnus Ullman(28)and Arnoud van den Berg(21)for the use of their photos in Fig.2(the numbers refer to the labels on the photos),and to Beatriz Acu?a Hidalgo for editing of these photos.We are indebted to Richard L.Pyle for exemplary help with registration of nomenclatural acts.We thank the editor and two anony-mous reviewers for comments on a previous version of the manuscript.Laurent Raty and Jimmy Gaudin keenly spotted nomenclatural issues that we could thereby address before the publication of the final version of this paper,with additional research and invaluably insightful input from Richard Schodde,Frank Rheindt,Laurent Raty,and Alan Peterson. （BBSRC grant BB/S019669/1）

鸟类学研究（英文版）

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