基于SPO语义三元组的自闭症谱系障碍药物知识发现OACSTPCD
Drug knowledge discovery for autism spectrum disorders based on SPO predications
目的:运用语义挖掘技术抽取自闭症相关文献中的三元组并构建自闭症药物实体知识图谱,深层次开展自闭症治疗的潜力药物知识发现,同时也为其他疾病发现有价值的潜在治疗药物提供新思路.方法:采用基于统一医学语言系统(ULMS)的工具SemRep、Metamap对自闭症文献记录进行处理并获得自闭症药物实体三元组,使用Neo4j数据库进行知识存储,构建自闭症药物实体知识图谱.基于该知识图谱,采用3种语义路径开展自闭症药物知识发现,并使用临床实验数据库(https://clinicaltrials.gov)对结果进行有效性验证与分析.结果:获得的实体三元组包括1 262个头实体、687个尾实体和18种实体关系;3种语义路径共发现32种药物,筛选出27种自闭症潜力药物,并且19种药物可以在临床实验数据库中验证.结论:基于语义三元组知识图谱开展自闭症药物知识发现可为药物重定位提供一定的理论和方法基础,为传统药物发现提供新的思路,以期为临床实验及其科学研究提供决策支持.
Objective:To extract SPO(Subject-Predicate-Object,SPO)from literature related to Autism Spectrum Disorders(ASD)using semantic mining technology and construct a knowledge graph of ASD drug entities,to explore the potential drug for the treatment of ASD at a deeper level,and provide new ideas for discovering valuable potential drugs for other diseases(https://clinicaltrials.gov).Methods:Using the tools SemRep and Metamap based on the Unified Medical Language System(ULMS)to process ASD literature records and obtain SPO of ASD drug entities.The Neo4j database was used for knowledge storage to construct an ASD drug entities knowledge graph.Using three semantic pathways to discovery ASD drug knowledge based on the knowledge graph.Then verified and analyzed the effectiveness of the results in the clinical trials databases.Results:The SPO obtained includes 1 262 head entities,687 tail entities,and 18 entity relationships.A total of 32 drugs were discovered through three semantic pathways,27 potential drugs for ASD was screened out,and 19 drugs can be validated in the clinical trials databases.Conclusions:The knowledge discovery of ASD drugs based on knowledge graph which built by SPO can provide a certain theoretical and methodological basis for drug repositioning,provide new ideas for traditional drug discovery,and provide decision support for clinical experiments and scientific research.
吕艳华;赵宏霞;李琦;梁傲雪;于琦
山西医科大学管理学院,山西 030001
自闭症谱系障碍知识图谱语义挖掘药物重定位
autism spectrum disordersknowledge graphsemantic miningdrug repositioning
《护理研究》 2024 (005)
796-804 / 9
国家社会科学基金一般项目,编号:20BTQ064
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