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葡萄纤维素合酶超家族基因鉴定及其表达分析OA北大核心CSTPCD

Identification and Expression Analysis of Cellulose Synthase/Cellulose Synthase-like(Cesa/Csl)Superfamily Genes in Grape(Vitis vinifera)

中文摘要英文摘要

果实硬度是鲜食葡萄品质的重要指标之一,对葡萄(Vitis vinifera)的商品性和市场价值有极大影响.细胞壁的结构与成分是导致葡萄果实硬度差异的重要因素,纤维素合酶(cellulose synthase/cellulose synthase-like,CesA/Csl)超家族是编码参与合成植物细胞壁中纤维素和半纤维素的关键酶,对果实硬度有着潜在作用.然而葡萄CesA/Csl超家族尚未得到系统鉴定.为探究葡萄CesA/Csl超家族在不同硬肉和软肉葡萄品种中的表达模式,本研究运用生物信息学方法,在全基因组水平鉴定葡萄CesA/Csl超家族基因,构建了系统发育进化树,并对基因的理化性质、结构及其品种表达特性等进行了分析.结果表明,葡萄CesA/Csl家族共有67个成员,在15条染色体上不均等分布;系统发育树分析显示,葡萄CesA/Csl家族成员被分为6个亚族,在进化中较为保守;该家族成员所编码的蛋白主要分布在质膜上,其氨基酸长度为128~1 406 aa;转录组分析结果发现,硬肉和软肉葡萄的成熟期果实中存在显著差异表达的CesA/Csl家族基因,这可能是导致果实硬度差异的关键基因.此外,在同一品种的不同发育时期,VvCesA4和VvCslB5的表达存在显著差异,可能调控果实生长发育过程中的硬度变化.通过qRT-PCR与不同品质果实硬度关联性分析发现,VvCesA4负向调控果实硬度,VvCesA2和VvCesA6正向调控果实硬度.上述结果表明,CesA/Csl超家族在葡萄硬度差异中发挥不同的调控作用.本研究为深入挖掘CesA/Csl超家族调控葡萄果实硬度的机制提供理论依据.

Fruit firmness is one of the important indicators of the quality of fresh grapes(Vitis vinifera),which greatly affects the commercial and market value of grapes.The structure and composition of cell walls are important factors leading to differences in grape fruit hardness.The cellulose synthase/cellulose synthase like(CesA/Csl)superfamily is a key enzyme involved in the synthesis of cellulose and hemicellulose in plant cell walls,which has a potential impact on fruit hardness.However,the grape CesA/Csl superfamily has not been systematically identified.In this study,to investigate the expression patterns of the grape CesA/Csl superfamily in different hard and soft meat grape varieties,bioinformatics methods were used to identify the genes of the grape CesA/Csl superfamily at the whole genome level.A phylogenetic evolution tree was constructed and the physicochemical properties,gene structure,and variety expression characteristics of the genes were analyzed.The results showed that there were 67 members of the grape CesA/Csl family,which were unevenly distributed on 15 chromosomes;Phylogenetic tree analysis showed that grape CesA/Csl members were divided into 6 subgroups,which were relatively conservative in evolution;The proteins encoded by members of this family were mainly distributed on the plasma membrane,with an amino acid length of 128~1 406 aa;The transcriptome analysis results showed that there were significantly differentially expressed CesA/Csl genes in the mature fruits of hard and soft meat grapes,which might be a key gene leading to differences in fruit hardness.In addition,there were significant differences in the expression of VvCesA4 and VvCslB5 at different developmental stages of the same variety,which might regulate the hardness changes during fruit growth and development.Through qRT-PCR and correlation analysis of fruit hardness among different varieties,it was found that VvCesA4 may negatively regulate fruit hardness,while VvCesA2 and VvCesA6 might positively regulate fruit firmness.Based on the above results,it could be found that the CesA/Csl superfamily plays different regulatory roles in grape hardness differences.This study provide theoretical basis for further exploring the mechanism by which the CesA/Csl superfamily regulates grape fruit firmness.

胡玲玲;徐涛;杨杰;龚丽丽;杨语心;杨中义;吴月燕

浙江万里学院生物与环境学院,宁波 315100

园艺学与植物营养学

纤维素合酶(CesA/Csl)基因生物信息学基因表达果实硬度葡萄

Cellulose synthase/cellulose synthase-like(CesA/Csl)geneBioinformaticsGene expressionFruit firmnessGrapes

《农业生物技术学报》 2024 (005)

1020-1036 / 17

宁波市科技创新2025现代种业重大专项(2019B10015);浙江省重点研发计划(2021C02053);浙江省教育厅一般科研项目(Y202351595);浙江省"生物工程"一流学科学生创新计划(CX2022025);浙江省大学生科技创新活动计划暨新苗人才计划(2023R419016)

10.3969/j.issn.1674-7968.2024.05.004

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