烟草糖苷水解酶GH3基因家族鉴定与表达分析OA北大核心CSTPCD
Identification and Expression Analysis of Glycoside Hydrolase GH3 Gene Family in Nicotiana tabacum L.
糖苷水解酶GH3 基因家族在植物的糖代谢和生长发育中起着重要作用,而烟草GH3 基因家族目前尚未见相关鉴定和分析研究报道.本研究采用生物信息学方法在烟草基因组中鉴定GH3 家族基因,并对其在不同组织中及逆境条件下的表达模式进行了分析.结果表明,在普通烟草K326 的基因组中共鉴定出35 个GH3 基因,其中 23 个被定位在 14 条染色体上,存在 6 对共线性基因;GH3 家族蛋白均为热稳定性蛋白,其基因上游启动子区均包含多个激素和胁迫响应元件.转录组数据表明,GH3 家族基因大多数在烟苗茎尖高表达,少部分在根和茎中高表达,表达量受光照时间影响;烟苗受到干旱胁迫后GH3 家族成员都有不同程度的响应.挑选 4 个NtGH3 基因进行qRT-PCR分析,结果表明,NtGH3-5、NtGH3-19、NtGH3-22、NtGH3-26 可能参与响应低温以及ABA处理.这可为深入了解烟草GH3 基因家族及其功能提供依据.
The glycosyl hydrolase GH3 gene family plays significant roles in sugar metabolism and growth and development in plants.However,the GH3 gene family has not been identified and analyzed in tobacco.In this study,we employed bioinformatics methods to identify the GH3 gene family in the tobacco genome and in-vestigated the expression patterns of GH3 gene family members in different tissues and under stress conditions.The results showed that a total of 35 GH3 genes were identified in the tobacco K326 genome,and 23 of which were located on 14 chromosomes with 6 pairs of collinear genes.The GH3 family proteins were found to be heat-stable,and their upstream promoter regions contained multiple hormone and stress-responsive elements.Transcriptome data revealed that a majority of GH3 genes were highly expressed in the shoot apex of tobacco seedlings,while a few genes showed high expression in root and stem.Moreover,the expression of GH3 gene family members in tobacco were influenced by the duration of light exposure,and had different response to drought stress.qRT-PCR analysis of the selected four NtGH3 genes indicated that NtGH3-5,NtGH3-19,Nt-GH3-22 and NtGH3-26 were potentially involved in response to low temperature and ABA treatments.These findings could provide a basis for further understanding the GH3 gene family and their functions in tobacco.
张贞宇;罗正飞;杨帅;顾江南;尹协;韦银龙;聂琼
贵州大学烟草学院/贵州省烟草品质研究重点实验室,贵州 贵阳 550025贵州大学农学院,贵州 贵阳 550025
农业科学
烟草GH3基因家族糖苷水解酶生物信息学分析表达模式
TobaccoGH3 gene familyGlycoside hydrolaseBioinformatics analysisExpression pattern
《山东农业科学》 2024 (004)
9-19 / 11
贵州省烟草公司重点研发项目(2022XM07)
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