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蝴蝶兰DREB基因家族鉴定及非生物胁迫表达分析OA北大核心CSTPCD

Identification of DREB Gene Family in Phalaenopsis aphrodite and its Expression Analysis Under Abiotic Stresses

中文摘要英文摘要

脱水响应元件结合蛋白(dehydration responsive element binding,DREB)基因家族在植物响应低温、干旱和高盐等非生物胁迫过程中发挥重要作用,目前对蝴蝶兰(Phalaenopsis spp.)DREB基因家族的相关研究报道较少.本研究基于阿婆蝴蝶兰(Phalaenopsis aphrodite)基因组数据库,开展了蝴蝶兰DREB家族成员的全基因组鉴定、进化关系分析、生物信息学分析、亚细胞定位和在低温、干旱、高盐3种非生物胁迫及脱落酸(abscisic acid,ABA)处理下的基因表达模式分析.结果显示,在阿婆蝴蝶兰基因组数据库中共鉴定得到了31个DREB家族成员,分为A1~A6共6个亚组;保守基序分析表明,所有PaDREB转录因子均含有1个AP2保守结构域.阿婆蝴蝶兰转录组表达模式分析结果显示,不同PaDREBs呈现组织差异性表达,且多数基因在根部高表达.分离A1亚组4个成员,将其分别命名为:PaDREB1A、PaDREB1B、PaDREB1C和PaDREB1D,亚细胞定位结果表明,其均定位于细胞核.PaDREB1A~PaDREB1D的表达模式分析结果表明,PaDREB1A主要响应干旱、高盐和ABA处理;PaDREB1B主要响应低温和高盐处理;PaDREB1C主要响应干旱和ABA处理;PaDREB1D主要响应低温、干旱和ABA处理.上述结果提示,蝴蝶兰DREB家族在响应非生物胁迫通路中具有重要作用,本研究为后续研究蝴蝶兰DREB家族响应非生物胁迫的作用机理提供理论依据.

The dehydration responsive element binding(DREB)gene family plays an important role in plant response to abiotic stresses such as low temperature,drought,and high salinity,and currently,there are few reports on the DREB gene family in Phalaenopsis spp.In this study,Phalaenopsis aphrodite was used as the reference genome for the identification.In addition,the subcellular localization,bioinformatics,and gene expression pattern of DREB family members under 3 abiotic stress conditions:low temperature stress,drought treatment,and salt stress,and abscisic acid treatment were studied and analysed.Using conserved structural domain analysis and BLAST comparison,31 DREB family gene members were found from the P.aphrodite genome database.PaDREB transcription factors were divided into 6 subgroups,numbered A1 to A6,according to phylogenetic research.Conserved motif analysis revealed that all of PaDREB transcription factors had a AP2 conserved structural domain.The transcriptome expression pattern study of P.aphrodite revealed that different PaDREBs showed differential tissue expression and most of the genes were highly expressed in the roots.The 4 members of subgroup A1 were isolated and named PaDREB1A,PaDREB1B,PaDREB1C,and PaDREB1D,respectively,and subcellular localization was carried out on them,and the results showed that all of them were localized in the nucleus.Meanwhile,the results of expression analysis of the above 4 members showed that PaDREB1A mainly responded to drought and high salt and ABA treatments;PaDREB1B mainly responded to low temperature and high salt treatments;PaDREB1C mainly responded to drought and ABA treatments;and PaDREB1D mainly responded to low temperature,drought and ABA treatments.The above results suggested that the DREB family of Phalaenopsis had an important role in the response to abiotic stress pathway,and this study provides a theoretical basis for further research on the mechanism of the DREB family's response to abiotic stress in Phalaenopsis.

胡子昂;罗平;辛静静;崔永一

浙江农林大学园艺科学学院,杭州 311300

园艺学与植物营养学

蝴蝶兰脱水响应元件结合蛋白(DREB)转录因子生物信息学分析亚细胞定位非生物胁迫

PhalaenopsisDehydration responsive element binding(DREB)transcription factorBioinformatics analysisSubcellular localizationAbiotic stresses

《农业生物技术学报》 2024 (008)

1715-1728 / 14

浙江省农业新品种重大专项花卉育种专项(2021C02071-5);浙江省"尖兵""领雁"研发攻关计划项目(2023C02028)

10.3969/j.issn.1674-7968.2024.08.001

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