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景宁木兰ZF-HD家族全基因组鉴定及其表达模式分析OA北大核心CSTPCD

Genome-wide Identification of ZF-HD Family and Its Expression Pattern Analysis in Magnolia sinostellata

中文摘要英文摘要

景宁木兰(Magnolia sinostellata)为浙江省特有极小种群,受到冠层遮荫胁迫影响,目前处于濒危状态.锌指同源结构域(zinc finger homeodomain,ZF-HD)是一类在植物发育及生物、非生物胁迫响应过程中发挥重要作用的转录因子.为了明确景宁木兰ZF-HD基因家族在弱光胁迫下的作用机制,本研究利用转录组数据对MsZF-HD家族成员进行鉴定及表达模式解析.基于景宁木兰叶片转录组数据和望春玉兰(M.biondii)基因组数据,本研究鉴定了12个MsZF-HD家族成员,均定位于细胞核,MsZF-HD2b也定位于叶绿体.系统发育分析表明,MsZF-HD家族分为4个亚族,所有成员均含有ZF-HD_dimer结构域,同一亚族成员之间的基序(motif)数量及其类型高度保守.GO分析表明,MsZF-HD家族成员广泛参与景宁木兰的生长发育.组织特异性表达分析表明,大部分MsZF-HD家族成员在景宁木兰叶芽和叶中具有较高表达量,其中MsZF-HD8在茎和叶中均高表达,而MsZF-HD13和MsZF-HD14在花和茎中高表达,说明其参与调控花发育和茎的伸长过程.此外,对遮荫胁迫下MsZF-HDs基因的表达模式进行分析,发现MsZF-HDs对弱光胁迫产生积极响应,其中MsZF-HD1a、MsZF-HD1b、MsZF-HD1c、MsZF-HD2a、MsZF-HD2b以及MsZF-HD14在受到弱光胁迫后显著下调表达(P<0.05);MsZF-HD13在弱光处理21和28d的基因表达显著上调(P<0.05);MsZF-HD11、MsZF-HD12和MsZF-HD8在弱光处理7d的基因表达显著上调(P<0.05),之后则呈下调趋势.本研究对景宁木兰ZF-HD家族成员进行了鉴定,并发现其在叶片、茎等组织中对弱光胁迫存在显著表达响应;筛选到MsZF-HD13与MsZF-HD8可能是景宁木兰响应遮荫,协调生殖生长、茎伸长及叶片衰老等过程的关键基因.本研究为解析景宁木兰遮荫响应机制提供理论依据.

Stress from canopy shade is currently endangering a very small population of the indigenous Magnolia sinostellata found in Zhejiang province.A group of transcription factors known as zinc finger homeodomain(ZF-HD)is crucial for the plant development as well as the response to biotic and abiotic stress.In order to gain a better understanding of the mechanism underlying the MsZF-HD gene family under low-light stress,this study aimed to identify the members of the ZF-HD gene family and investigate their expression patterns based on transcriptome data.Twelve members of the MsZF-HD family were found using transcriptome data from M.sinostellata leaves and genomic data from M.biondii.The 12 MsZF-HDs located in the cell nucleus,and MsZF-HD2b also located in chloroplast.The ZF-HD_dimer structural domain was present in all members of the MsZF-HD gene family,which was revealed by phylogenetic analysis to be separated into 4 subfamilies.Additionally,the number and types of motifs were substantially conserved among the members of the same subfamily.According to GO analysis,members of the MsZF-HD family played a significant role in the expansion and evolution of M.sinostellata.Tissue-specific expression study revealed that most MsZF-HDs genes were substantially expressed in M.sinostellata leaf buds and leaves.MsZF-HD8 was highly expressed in both stems and leaves,while MsZF-HD13 and MsZF-HD14 were highly expressed in both flowers and stems,indicating that they might be involved in stem elongation and the regulation of floral development.Additionally,it was discovered that MsZF-HDs all responded favorably to low-light stress after studying the expression pattern of the MsZF-HDs gene under shade stress.Under low-light stress,the expression of MsZF-HD1a,MsZF-HD2b,MsZF-HD1b,MsZF-HD1c,MsZF-HD2a and MsZF-HD14 decreased.MsZF-HD13gene expression was significantly upregulated after 21 and 28 d of low-light treatment(P<0.05).MsZF-HD11,MsZF-HD12 and MsZF-HD8 showed significant upregulation of gene expression after 7 d of low-light treatment(P<0.05),followed by a downward trend.The ZF-HD family members of M.sinostellata were identified in this study and it was discovered that there was a significant expression response to low-light stress in leaf,stem and other tissues.MsZF-HD13 and MsZF-HD8 were found to be key genes in the response to shading to coordinate reproductive growth,stem elongation and leaf senescence.This study offers a theoreti-cal framework for examining M.sinostellata's shade response mechanism.

朱森宇;申亚梅;陈小珺;马晶晶;任明杰;王晶晶;吴超;田丰;刘志高;樊民亮

浙江省园林植物种质创新与利用重点实验室/浙江农林大学风景园林与建筑学院,杭州 311300浙江省林业科学研究院,杭州 310023

园艺学与植物营养学

锌指同源结构域(ZF-HD)转录因子家族景宁木兰弱光基因表达

Zinc finger homeodomain(ZF-HD)transcription factor familyMagnolia sinostellataLow-lightGene expression

《农业生物技术学报》 2024 (008)

1809-1820 / 12

浙江省"十四五"育种专项花卉协作组项目(2021C02071-3)

10.3969/j.issn.1674-7968.2024.08.009

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