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NoV G Ⅱ.2亚型RT-RPA-CRISPR/Cas12a检测方法的建立OA

Establishment of RT-RPA-CRISPR/Cas12a Assay for Norovirus G Ⅱ.2

中文摘要英文摘要

近年来,一种新的诺如病毒G Ⅱ.2 亚型(norovirus G Ⅱ.2,NoV G Ⅱ.2)通过牡蛎等生食海鲜感染人群,引发急性胃肠炎,并在全球广泛传播.为实现NoV感染的现场诊断和快速疫情响应,亟需建立快速便捷的NoV G Ⅱ.2 亚型核酸检测方法.本研究通过设计引物、crRNA,经优化反应条件后,建立了NoV G Ⅱ.2 亚型RT-RPA-CRISPR/Cas12a检测方法.结果显示:利用引物NoV-G Ⅱ.2-F1B和NoV-G Ⅱ.2-R1对NoV G Ⅱ.2标准RNA进行RT-RPA扩增,结合crRNA1 介导的CRISPR/Cas12a报告体系,能在 40 min内完成NoV G Ⅱ.2核酸检测;该方法检测灵敏度为10 copies/μL,且与轮状病毒、腺病毒、星形病毒、人副肠孤病毒、博卡病毒和札如病毒无交叉反应;应用该方法和qRT-PCR法,分别对30份临床模拟样本进行检测,发现总符合率达96.67%.结果表明,本研究建立的NoV G Ⅱ.2亚型RT-RPA-CRISPR/Cas12a检测方法无需依赖昂贵设备,具有灵敏度高、特异性强、操作便捷快速等特点,为NoV G Ⅱ.2 感染的现场检测和防控提供了新方法.

In recent years,a novel G Ⅱ.2 subtype of Norovirus(NoV G Ⅱ.2)has appeared,which causes human acute gastroenteritis through raw seafood such as oysters,is widely distributed in the world.In order to achieve on-site inspection of NoV infection and rapidly response to an outbreak,it was urgent to establish a fast and convenient method for detection of nucleic acids of NoV G Ⅱ.2.In the study,a RT-RPA-CRISPR/Cas12a assay for NoV G Ⅱ.2 was established through designing primers and crRNA and optimizing reaction conditions.The results showed that RT-RPA amplification was conducted for NoV G Ⅱ.2 standard RNA using primers of NoV-G Ⅱ.2-F1B and NoV-G Ⅱ.2-R1,and the detection could be completed within 40 min in combination with crRNA1-mediated CRISPR/Cas12a reporting system;the method,with a detection limit of 10 copies/μL,failed to interact with rotavirus,adenovirus,astrovirus,human parvovirus,bocavirus and zarovirus;30 clinical simulated samples were tested separately by the established method and qRT-PCR,it was found that the overall compliance rate was 96.67%.In conclusion,the established method was characterized by strong sensitivity,specificity and accessibility without any expensive equipment,contributing to the on-site detection,prevention and control of NoV G Ⅱ.2 infection.

樊成;曾昊;卢星月;康婕;雷兰兰;刘静;郑玉红;钱卫东;王婷

陕西省产品质量监督检验研究院,陕西西安 710048陕西科技大学生物与医药学院,陕西西安 710021

畜牧业

NoV G Ⅱ.2亚型反转录重组酶聚合酶扩增CRISPR/Cas12a系统快速检测

NoV G Ⅱ.2 subtypereverse transcription recombinase polymerase amplificationCRISPR/Cas12a systemrapid detection

《中国动物检疫》 2024 (008)

90-97 / 8

国家市场监管总局科技计划项目(2021MKl07);西安市未央区科技计划项目(202208)

10.3969/j.issn.1005-944X.2024.08.017

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